Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01132 ATGGTTCGCTCTAGTAGCATCATCCTCTTTACTCACCTTGCTCGTCGATCACTTTTTCATGCCAACGATTCCGTATATCAAGTAGTTTTCCACAGGGGTTATAGGACATTGAATTTAGGATCATGCAATTCACCTAGAGTTATTGGTAGTAATGCACCAAATGTTAAAGGCTGTGTTAATTTGAAGAACTGGTTGCTATTGGGAGCGGCTAATTCATATTTAGGGGCGTCTAGATCAATTCATGGCTCAGCACCGTTGGCAAGGGACTATTATGATGTTCTTGGTGTGAGTAAAGATGCAAGCTCTTCTGAAATAAAGAAAGCTTACTATGGGCTTGCAAAGAAGCTTCATCCAGACACAAATAAAGATGATCCCGAGGCTGAAAAGAAGTTTCAAGAAGTCACGGTGGCATATGAGGTTTTGAAGGATGAGGAAAAGCGTCAACAGTATGATCAGGTTGGACATGATGGCTATGTAAACCAACAAAGCACTGGTTTCGGAGGCGAGGGTGGCTTCAATCCTTTCGAGCATGTGTTCAATGGCCAGGATATTTTCAACAACTTTTTCCGTCAGAGTGCTGATGTCAAGACTGTCATTGAACTATCTTTTACCGAAGCTATCCAAGGGTGCACCAAAACTTTGGCATTTCAAACAGATGTGCTTTGTAATGCTTGTGGTGGGAGTGGTGTTCCTCCTGGTACAAGACCTGAAACTTGTACGCGATGTAAAGGGTCAGGGATGATATTTGTACAAACTGGAATATTCAGAATGCAGAGTCCTTGTGGTACCTGCAAAGGAACTGGAAGAATTGTATCGAACTTCTGCAGGTCTTGCAAGGGTGCGAAAGTTGTCAAAGGAACAAAGACAGTAAAGTTAGATATTATATCTGGAATCGACAACAATGAGATCCTAAAGGTGTATGGCGGTGGAGGAGCAAATCCTGATGGACACCATTCTGGTGATCTATATGTTACTATCAAGGTTAGGGAAGATCCTGTTTTTCGCAGAGAAGGATTAGATGTTCATGTGAATGCTGTTTTAAGTTTTACTCAGGCGATTTTGGGGGCAACCATTGAGGTTCCGTCTTTTACTGGAAATGTAATGCTTAAGGTTCCCCCAGGCACCCAACCTGGTCAAAAGGTGGTTTTGAAAAGGAAAGGTATAAGGAAAGGAACAAATAGTTTCAAATATGGCGACCAATATGTTCATTTTAATGTCAGCATTCCAACAAGCCTGACAGAGAGGCAGCGTGAATTGATCGAAGAGTTTGCCAAGGAAGAGCAAGAGGAATCGGATAAACGGAAAGCTGCTTCGGCTTCTAGTTAA 1326 0.4231 MVRSSSIILFTHLARRSLFHANDSVYQVVFHRGYRTLNLGSCNSPRVIGSNAPNVKGCVNLKNWLLLGAANSYLGASRSIHGSAPLARDYYDVLGVSKDASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVTVAYEVLKDEEKRQQYDQVGHDGYVNQQSTGFGGEGGFNPFEHVFNGQDIFNNFFRQSADVKTVIELSFTEAIQGCTKTLAFQTDVLCNACGGSGVPPGTRPETCTRCKGSGMIFVQTGIFRMQSPCGTCKGTGRIVSNFCRSCKGAKVVKGTKTVKLDIISGIDNNEILKVYGGGGANPDGHHSGDLYVTIKVREDPVFRREGLDVHVNAVLSFTQAILGATIEVPSFTGNVMLKVPPGTQPGQKVVLKRKGIRKGTNSFKYGDQYVHFNVSIPTSLTERQRELIEEFAKEEQEESDKRKAASASS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01132 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 188 336 IPR008971 GO:0006457|GO:0051082
Vivi5g01132 441 ProSiteProfiles Zinc finger CR-type profile. 209 287 IPR001305 GO:0031072|GO:0051082
Vivi5g01132 441 Gene3D - 222 282 - -
Vivi5g01132 441 Gene3D - 329 439 - -
Vivi5g01132 441 ProSiteProfiles dnaJ domain profile. 89 154 IPR001623 -
Vivi5g01132 441 SMART dnaj_3 88 146 IPR001623 -
Vivi5g01132 441 Gene3D DnaJ domain 86 195 IPR036869 -
Vivi5g01132 441 SUPERFAMILY Chaperone J-domain 88 188 IPR036869 -
Vivi5g01132 441 FunFam Molecular chaperone DnaJ 214 287 - -
Vivi5g01132 441 PRINTS DnaJ domain signature 109 124 IPR001623 -
Vivi5g01132 441 PRINTS DnaJ domain signature 126 146 IPR001623 -
Vivi5g01132 441 PRINTS DnaJ domain signature 146 165 IPR001623 -
Vivi5g01132 441 PRINTS DnaJ domain signature 91 109 IPR001623 -
Vivi5g01132 441 CDD DnaJ 89 143 IPR001623 -
Vivi5g01132 441 Pfam DnaJ central domain 222 282 IPR001305 GO:0031072|GO:0051082
Vivi5g01132 441 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 285 IPR036410 -
Vivi5g01132 441 Gene3D - 196 324 - -
Vivi5g01132 441 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 60 432 - -
Vivi5g01132 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 333 420 IPR008971 GO:0006457|GO:0051082
Vivi5g01132 441 CDD DnaJ_zf 222 282 IPR001305 GO:0031072|GO:0051082
Vivi5g01132 441 ProSitePatterns Nt-dnaJ domain signature. 131 150 IPR018253 -
Vivi5g01132 441 Pfam DnaJ domain 89 151 IPR001623 -
Vivi5g01132 441 Pfam DnaJ C terminal domain 196 409 IPR002939 -
Vivi5g01132 441 FunFam Chaperone protein dnaJ GFA2, mitochondrial 86 196 - -
Vivi5g01132 441 CDD DnaJ_C 193 412 - -
Vivi5g01132 441 Hamap Chaperone protein DnaJ [dnaJ]. 86 436 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vivi5g01132 441 FunFam Chaperone protein dnaJ 1, mitochondrial 329 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01132 Vivi-Chr5 28232745 28239025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01132 90 151 C2H2 Transcription Factor Family AT1G74250 43.284 8.40e-08 52.8