Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01125 ATGGGTGTTGTCCGAGTCCTCTCTACTGATACAATCAAGGCACCAAAATCCAATGATAAGAAAATCCATTTAACTCCATGGGATCTCCAATTTCTATATACTCCATCCAACAAAAAAGGTCTTCTTTATCACCATCCATTAGTAGCAAACCAAATCCAACATTTGAAATACTCTCTATCATCTGTCCTTGAATTTTTCCAACCTCTTGCTGGTCGTCTTAAAATAACGGAACACAGAGACAATATTATCTCGTGTTCTATTATTTGCAACAATGCAGGTGTTCTCTTTATTCATGCAGCCGTAGAAAATATATGTGTTGCTGATATCTTAGAACCCATATACGTTCCTTCAATTGTTAGTTCATTTTTCCCTTTTATCGGAGCTAGTAACTATGAAGGTACGTCACAACCGTTGTTGGCTGTTCAAGTCACGGAGCTAGTTGATGGCATCTTTATTGGTTGCAATGTCAACCATGTGGTTGTTGACGGAAATTCCTTATGGCATTTTATTAATTCTTGGTCTGAAATTTCACGTAGTTCTTGTCATCGTCAAATATCCAAACCCCCAATATTGGAACGTTGGTTTCCTAATGATATTCAACATCCTGTACAATTTGCTTATACTATGGAGTCACAAAAGAATCACTCTGATGGGTCGAATTCTTCACCATCTGATAATGAACTCAATTTATCAGAGAGATTATTTCATTTCAAAAAGGAGAAAATCTTGCAACTAAAATCAAAATTCAATACGCATATTGATAGTACCATCAAAGTATCCTCTTTACAAGCACTTTTAACTCATGTTTGGTCCTCCTTTGTTCGTTCCAAAAAATTTGATCCACAAGAAGAAGTTCATAACATGTTTTTGATCGGGGTTGGACCAAGATTACATCCACCTTTGCTAGAAGGTTACTTTGGAAACACAATTATAACTTGTACAGTTACCATGAAAGCTGGAGAGTTGTTGAAGGAAGGCGGGGTTTGTGATGGTGCTTGCGAGATGAACAAGTTAATTGCTTCATACTCTAATGAGAAGATAAAGAATCACTACGAATCTTGGTTGAAAAATCCAAATATTATTAGGCTTAATGACATATCGAATAATAATTTCTTAGTCATAAGTAGTTCTCCACATTTTGATGTTTATGGTAATGATTTTGGATGGGGAAAGCCAGTGGCAGTTCGATGTTCAAATAAAGTAAATGGACTTGTTACAGTGTTTGCTGGAGCAGAAGAAGGTAGTATTGATCTTCAACTATGTCTTCCTTATAATGTTTTAGAGAGAATGGGAAATGATCTCCAATTCATGAATGTTGTGTCCAACTGA 1329 0.3604 MGVVRVLSTDTIKAPKSNDKKIHLTPWDLQFLYTPSNKKGLLYHHPLVANQIQHLKYSLSSVLEFFQPLAGRLKITEHRDNIISCSIICNNAGVLFIHAAVENICVADILEPIYVPSIVSSFFPFIGASNYEGTSQPLLAVQVTELVDGIFIGCNVNHVVVDGNSLWHFINSWSEISRSSCHRQISKPPILERWFPNDIQHPVQFAYTMESQKNHSDGSNSSPSDNELNLSERLFHFKKEKILQLKSKFNTHIDSTIKVSSLQALLTHVWSSFVRSKKFDPQEEVHNMFLIGVGPRLHPPLLEGYFGNTIITCTVTMKAGELLKEGGVCDGACEMNKLIASYSNEKIKNHYESWLKNPNIIRLNDISNNNFLVISSSPHFDVYGNDFGWGKPVAVRCSNKVNGLVTVFAGAEEGSIDLQLCLPYNVLERMGNDLQFMNVVSN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01125 442 Gene3D - 216 432 IPR023213 -
Vivi5g01125 442 Pfam Transferase family 6 433 - -
Vivi5g01125 442 Gene3D - 2 215 IPR023213 -
Vivi5g01125 442 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01125 Vivi-Chr5 28205423 28207441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01125 32 393 Monolignol Biosynthesis Gene Families AT5G48930 28.682 3.74e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01125 - - vvo:131606449 577.785