LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g01118	ATGGACAATGAGGAAGCCCCAAAAACCTCCAGAAGAAAGACAAGGTCTTCGGCAGCATCAACATCAACATCCACTTCAAATATTCAACATGACCTAAAACTGAACAACCCCGAAACTCTAACAATTAACAACCTTTTAGTTGGAGGAGACTCCATTACCCTAGATGATATAGTTTCCAATTTTCCCGGTGCAAGTAGCCAAATTCTTGAGATTGTGCGTCTTTTGGGACCGTTAAATTCACCCTTACTTCCTTTGTTTGTGTATGGAGGTGCTTCTACTGGAAAAACCAGTATCATTCTTCAATTGTTTAGACATCTCAACAGGCCTATCGTCTATTCTAGTTGTAGGACGTGTTATAATCAGCGCATATTGTTCGAGTCTGTTCTAAATCAGTTGCTTCTCCATACCAAAAATGTTGCCAATTGTTATACGAATGCTAAGCGCTGTGAACGACCGTCTGATTTCGTCAATTTCCTTCGGGAAGCATTGACCGGTGTTATAAGTAATCTCAAGGAGAAATCAGAAAAGTTGGCCGCAGAAAACAAGATGCATGGCGGAATGGGAAATATGATCTACTTAGTATTTGACAATTTTCATCTTGTTAGAGATTGGGATAAAAGCTCTACTATATTGCCCTTATTGTTTAATCTCTATGATATGCTAAAGATGCCCGAGGTTGGTTTCATTTTCGTCAGTAGTACTTCCCCTGATACCTTTTACTCTAACATGGGTTATGTTGAGCCCGTCCCCGTCTGCTTTCCTGATTACACAGAAGCTGATATTCGTCAAATATTATTGAAAAACCAAGCAAACCAGAAGTTGTATTCTTCATTTCTCGATGTAGCTCTGAGACCTTTATGTAGAATTAGTAGGCAGGTGGATGAATTGTCTACTGCCTTAAAGCCACTATTTGAAAAATATTGTGAACCTTTGAGTGATAAGGGAAAGGGAGTTGTCCCTACAGAAGACATGAAGAGGAGGCTATTCAATCATATCAGGCCTCATATTGCCTCATCTCTGAATGATGTATTTAAGGTTTCGCCTCCTCCTTCAAGTGAAGTTAGGGACAGTAAAGAGACAAAGCATAAGGGAAAGAGATTAGAGAAGTTTGAGGAAATCGGCGATCTTGATTTTTATATGTCAACTAGTGCAAAGTATCTTCTTATTTCATCATTTCTTGCCTCCAGAAACCCTGCCACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGAAAGAGGAAGGCTTCAGAGAAAGTGCTGGAAAAGAAGGAAATTTTAGAAGAGGAACTACTAATGAAAGGGCCTGGAACTTTCCCATTGGAGAGGTTGATAGCCATCTTTCAGTGTATTGTATCTGTTGCAGAAGAACCATACGATGAAGAACAAAACAACGATGAATTAGGAGCTGAATGTAGCAACGGTTCACTGATTTCCGACGTTCTCTTGCAGCTTTCAACTCTCTGCAATGCTAATTTTATTTTCAAAGGGAAAAGCTGTCCAATTGAGGGCTCTACTCGGTATCGATCAACTATTTCTGAAAACCTGGCCTTAAAGGTTGCAAGGAGCCTAAAGTTCCCATTGTCAAAGTATTTGTACAGAAATTAG	1623	0.3974	MDNEEAPKTSRRKTRSSAASTSTSTSNIQHDLKLNNPETLTINNLLVGGDSITLDDIVSNFPGASSQILEIVRLLGPLNSPLLPLFVYGGASTGKTSIILQLFRHLNRPIVYSSCRTCYNQRILFESVLNQLLLHTKNVANCYTNAKRCERPSDFVNFLREALTGVISNLKEKSEKLAAENKMHGGMGNMIYLVFDNFHLVRDWDKSSTILPLLFNLYDMLKMPEVGFIFVSSTSPDTFYSNMGYVEPVPVCFPDYTEADIRQILLKNQANQKLYSSFLDVALRPLCRISRQVDELSTALKPLFEKYCEPLSDKGKGVVPTEDMKRRLFNHIRPHIASSLNDVFKVSPPPSSEVRDSKETKHKGKRLEKFEEIGDLDFYMSTSAKYLLISSFLASRNPATLDASLFDSKGGSDNRKRKRKASEKVLEKKEILEEELLMKGPGTFPLERLIAIFQCIVSVAEEPYDEEQNNDELGAECSNGSLISDVLLQLSTLCNANFIFKGKSCPIEGSTRYRSTISENLALKVARSLKFPLSKYLYRN	540

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g01118	540	Pfam	Origin recognition complex (ORC) subunit 5 C-terminus	251	537	IPR047088	-
	Vivi5g01118	540	Coils	Coil	160	180	-	-
	Vivi5g01118	540	Gene3D	-	64	242	IPR027417	-
	Vivi5g01118	540	Coils	Coil	415	435	-	-
	Vivi5g01118	540	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	59	326	IPR027417	-
	Vivi5g01118	540	MobiDBLite	consensus disorder prediction	13	30	-	-
	Vivi5g01118	540	PANTHER	ORIGIN RECOGNITION COMPLEX SUBUNIT 5	52	539	IPR020796	GO:0000808\|GO:0005634\|GO:0006260
	Vivi5g01118	540	MobiDBLite	consensus disorder prediction	1	30	-	-
	Vivi5g01118	540	Pfam	AAA ATPase domain	63	217	IPR041664	-
	Vivi5g01118	540	FunFam	Origin of replication complex subunit 5	61	242	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g01118	4	539	Core DNA Replication Machinery Family	AT4G29910	57.699	0.0	634

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g01118	K02607		-	gmx:100782175	797.734