LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g01089	ATGAGGCAGTTTGTATGTAACAAAAATGGATTAAGAGACAAGAAGCACTTGGCTAGGTTAGATAGGGAAAGAGAACACCGATGTACAACCCGTACTAGTTGCAAATCTAGGCTCCGTGTGCATTACAATAAGAAAAAAGGGAAATATGTTGTGTCATTTCTTGAAGAGGCTCATAACCATGAATTAACCCCGACAAAGTTTGTGCATTTACACCCCGGTTACCATCAAATATCTGAGGCAAATAGAGCTCAAATTGGCAGTCTTCAATCACATGGTATCAAAACGTGTCATATAATGGGGTACATGGTTGCTCAAAAGGGTGGATATAATGATGTTGGTTTTACAAAGAAAGATTTGTACAATTATTCCGACAAAAAAATGCGTGATGTTATTAAGGATGGTGATGTTGATGATGCCTTAAATTATCTCAAAGTGAAATCATCTACGGATCCTATGCTTTATGCAGAATATTGTGTCAATAGTGATGGAAGATTGAAGTCACTTTTTTGGGCAGACGGCGTTAGTAGATCGAACTATATCTGTTTTGGTGATGTTCTTGCATTTGACACAACTTACAAGAAGAACAAATATAATTATCCCTTGGTTATATTTTCTGGTTGCAACCACCACTCACAATATTCGGTGCTGCATTGGTGTCGGACGAAACGGCAGAGACGTATAAGTGGTTGTTGA	693	0.381	MRQFVCNKNGLRDKKHLARLDREREHRCTTRTSCKSRLRVHYNKKKGKYVVSFLEEAHNHELTPTKFVHLHPGYHQISEANRAQIGSLQSHGIKTCHIMGYMVAQKGGYNDVGFTKKDLYNYSDKKMRDVIKDGDVDDALNYLKVKSSTDPMLYAEYCVNSDGRLKSLFWADGVSRSNYICFGDVLAFDTTYKKNKYNYPLVIFSGCNHHSQYSVLHWCRTKRQRRISGC	230

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g01089	230	PANTHER	OS01G0519700 PROTEIN	2	205	-	-
	Vivi5g01089	230	Pfam	FAR1 DNA-binding domain	2	63	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g01089	Vivi-Chr5	26987595	26988287	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Vivi5g01089		FAR1	1.5e-12	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g01089	-		-	vvo:131650638	390.578