Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01064 ATGTCTCTTTCTAAACCCTTGCTGCAACTACTCAATTGTGCAAATAAAAATCAGAGTTCGAAAACAACGAACTCTAGAAGATGTGACACTGATGATGCATTAGGGTTTCTAAAGGCAGTAAAACTTGCATTTAAATATGACAAGAAAAACTATGATCGATTTATAGAAGTCCTAAGAGATTTCAGTGCTAAGAGAATTCAGAAGAACCCTCTTCAAATAAGTGGTCTCAAAGCAAAAGTCAAGAGCTTGTTTAAAGGACATGTAGATTTAGTTTCGGAATTCAACAAATTCATGCCAAAGGAACATCGAATCACACTTCCGCGTGACACTGGGAAAAATAAGAAGTTAGGAGAGATCTGTCAACTTCCTTGGGATGTGCTGGATGTCATTTCGCAAAAACTTGATTTTGAGGAGCTCTTTCAATTTTATGGTGTATGCAAGAATTGGAGGACTTTTTATAAATCAAATTTCTTGTCATCTCAAGAACCATTTCTTGTTGAGATTTCGGGTTATCCTCGCAGGGGACGACCAAATTGCTTTATTAGCCTACCCAATAAAAAGGTTTATAACTTGAAGAAGATGATGAGGAAGATGGTGAGTTACTCCAAACTCACTCGCCCTATGTATGTTGGTTATTCTAGTGGATATTTTATTATTAAAACTAATTCAACATGTCTCCTAATCAATCCATTTACAAGGATAAAGAAGGTAATCAATTCATCACCATTCTTTGGATTTGATATCACCATTGATCAGTTGCATGGCTTGCTTGCTTTTGAAAAATGCTCTGAGGAATTTGTGTTGTTGGTTTTATGCAAAAAGCATGGCAGTTTGTATGGCTATCAGTCTCGAAATAATGGTTGGGTTACTTATTTCAGAAAAGGAAAGCGAGAGATGATTCATGACATTATGGTTTTGAATAACATAATATATGCTGTGACTAACAAGGGCAGAATAGGTGTAGTCAGTTTAAATTCGGCAATTATTAAATTTCGAAAACTGAAGAATACTCCCAATATAGTCACCTTTTCAAACCTTTACTTGGTTAACTATGACGAGCAACTTTTAGTGGTTGGATTAAATCCTGTTAGATTTGGCAGGCTTGACAGGGCAGTTTACAAGATAGACTGGTTAACCATGAGGTATGTTGAATTGAAAAGCTTGGGGGACATTGCATTATTTCATGTTAAGGGAAAATGTTGTAAGTCATTGAGCAACCCAAATAGGTGGGGATATGAGAGTAACTCTGTGTATGAAGTTGACTTTCATTTTAACAAATATAGTGTGTATAATTGGGATAAAGAATGGGATCAAAAATATATGGAGTTTCCAAGGACAAGACGAGACTCATTGCAATCATGGCTGAGTGAATATGATTGGTGTTGTAATCAAAAATATGAAGTAGATTACTCTCTAGTTGAGTAA 1425 0.3558 MSLSKPLLQLLNCANKNQSSKTTNSRRCDTDDALGFLKAVKLAFKYDKKNYDRFIEVLRDFSAKRIQKNPLQISGLKAKVKSLFKGHVDLVSEFNKFMPKEHRITLPRDTGKNKKLGEICQLPWDVLDVISQKLDFEELFQFYGVCKNWRTFYKSNFLSSQEPFLVEISGYPRRGRPNCFISLPNKKVYNLKKMMRKMVSYSKLTRPMYVGYSSGYFIIKTNSTCLLINPFTRIKKVINSSPFFGFDITIDQLHGLLAFEKCSEEFVLLVLCKKHGSLYGYQSRNNGWVTYFRKGKREMIHDIMVLNNIIYAVTNKGRIGVVSLNSAIIKFRKLKNTPNIVTFSNLYLVNYDEQLLVVGLNPVRFGRLDRAVYKIDWLTMRYVELKSLGDIALFHVKGKCCKSLSNPNRWGYESNSVYEVDFHFNKYSVYNWDKEWDQKYMEFPRTRRDSLQSWLSEYDWCCNQKYEVDYSLVE 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01064 474 CDD F-box_SF 121 150 - -
Vivi5g01064 474 Pfam Paired amphipathic helix repeat 51 97 IPR003822 GO:0006355
Vivi5g01064 474 SUPERFAMILY F-box domain 118 158 IPR036047 GO:0005515
Vivi5g01064 474 Gene3D Paired amphipathic helix 22 100 IPR036600 GO:0006355
Vivi5g01064 474 ProSiteProfiles PAH domain profile. 26 101 IPR003822 GO:0006355
Vivi5g01064 474 PANTHER OS06G0113600 PROTEIN 126 446 - -
Vivi5g01064 474 SUPERFAMILY PAH2 domain 27 101 IPR036600 GO:0006355
Vivi5g01064 474 ProSiteProfiles F-box domain profile. 116 168 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01064 Vivi-Chr5 26099302 26101157 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01064 30 109 WRKY Transcription Factor Family AT4G12020 46.914 3.30e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi5g01064 PAH 5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01064 - - vvo:131606415 978.778