Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01044 ATGGCACAAAAACATATTCTCATATCACTAGTTATTTTTCTCTCACTCCTCTTCGAGTCCTCCTTGGCCAAACATAATTCTCAAACAATAACCTACATAAAATCCTCTTGCAATGGTACTCTTTATCCTAATCTATGCATTCGTTGCCTTAACAAATTTTCACATTCAACCATAAATGGTCCTCAACACTTAGCCCAACTTGCCTTATCTGTTAGCCTCTCCAAAGCCCTACAAACAAGAGCATACCTTTTGAATGTTGCCAAAGAACTCAAAACAATTGATCATAACAACAAAAGGATGCATCTAACCGTGCAAGATTGTGTGAATCAAATAAGTGATAGTGTTGATCAACTTACCCAAGCCATCAAAGAACTTAAAAGATTCAACCAATTTAATACTATCATAAATGATAAAGTGTTGTGGCACATAAGTAATGTTGAGACATGGGTTAGCACTGCCCTAACTGATGCTAGTAGTTGCGTAGAATCGTTCTCTGGTCATAGAATAAGTAAAAGGGTTGCGACGATTAAGGTTAGGGCGAAGAATGTTGCAGAAGTTACTAGCAATGCACTTGCTTTGTTTCATAGTTATGCTTCTAGGTACAAACTTGCAACCAAGAAGCCTTGA 627 0.3732 MAQKHILISLVIFLSLLFESSLAKHNSQTITYIKSSCNGTLYPNLCIRCLNKFSHSTINGPQHLAQLALSVSLSKALQTRAYLLNVAKELKTIDHNNKRMHLTVQDCVNQISDSVDQLTQAIKELKRFNQFNTIINDKVLWHISNVETWVSTALTDASSCVESFSGHRISKRVATIKVRAKNVAEVTSNALALFHSYASRYKLATKKP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01044 208 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 197 IPR035513 -
Vivi5g01044 208 Pfam Plant invertase/pectin methylesterase inhibitor 32 193 IPR006501 GO:0004857
Vivi5g01044 208 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 196 IPR035513 -
Vivi5g01044 208 CDD PMEI-like_3 35 199 - -
Vivi5g01044 208 FunFam Pectinesterase inhibitor 3 28 198 - -
Vivi5g01044 208 NCBIfam pectinesterase inhibitor domain 6 197 IPR006501 GO:0004857
Vivi5g01044 208 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 193 - -
Vivi5g01044 208 SMART PMEI_2 28 193 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01044 Vivi-Chr5 25647419 25648074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01044 19 194 Carbohydrate Esterase AT5G53370 28.415 9.86e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01044 - - gmx:100791798 280.796