Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01043 ATGGCACAAAAACATATTCTCATATCACTAACTATTTTTCTCTCACTCCTCTTAGAGTCCTCCTTGGCCAAACATAATTCTCAAACAATAACCTACATAAAGTCATCTTGCAATGGAACTCTCTATCCTAATCTATGCATTCGTTGTCTTAACAAATTCTCACATTCAACCATAAATGGTCCTGAACACTTAGCCCAGCTTGCCTTATCCGTAAGTCTCTCTAGAGCTCTACAAACAAGAGTATACCTTTTAAATGTAGCCAAAGAACTCATGACAATTGATGATAACAACAAAAGGATGTATCTAACCGTGCAAGATTGTGTGAATCAAATCAATGATAGTGTAGACCAACTTACTCAAGCCATCAAAGAACTAAAAAAATTGAACCAATTTAACACCATCATAAATGATAAAGTGTTGTGGCACATAAGTAATGATGAGACATGGGTAAGCACTGCCTTGACAGATGCTAGTAGCTGTGTACAATCGTTTCCTGGTCACAGGATGAGTAAAAGGGTTGCGACGATTAAGGTTAGGGCGAAGAATGTTGCAGAAGTTACAAGTAATGCACTTGCTTTGTTTAATAGTTATGCTTCTACGTACAAACTTGCAGCTGCTGGAACAACCAAGAAGCCTTGA 639 0.3772 MAQKHILISLTIFLSLLLESSLAKHNSQTITYIKSSCNGTLYPNLCIRCLNKFSHSTINGPEHLAQLALSVSLSRALQTRVYLLNVAKELMTIDDNNKRMYLTVQDCVNQINDSVDQLTQAIKELKKLNQFNTIINDKVLWHISNDETWVSTALTDASSCVQSFPGHRMSKRVATIKVRAKNVAEVTSNALALFNSYASTYKLAAAGTTKKP 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01043 212 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 197 IPR035513 -
Vivi5g01043 212 NCBIfam pectinesterase inhibitor domain 6 197 IPR006501 GO:0004857
Vivi5g01043 212 CDD PMEI-like_3 35 199 - -
Vivi5g01043 212 SMART PMEI_2 28 193 IPR006501 GO:0004857
Vivi5g01043 212 Coils Coil 108 128 - -
Vivi5g01043 212 FunFam Pectinesterase inhibitor 3 28 198 - -
Vivi5g01043 212 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 193 - -
Vivi5g01043 212 Pfam Plant invertase/pectin methylesterase inhibitor 32 193 IPR006501 GO:0004857
Vivi5g01043 212 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 196 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01043 Vivi-Chr5 25608791 25609429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01043 19 194 Carbohydrate Esterase AT5G53370 25.926 2.46e-09 54.7