Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01031 ATGACAACCTATGCCACCGTTTTGTTTCTCCTCTTTGTCATGTTCATAACCACTTCCTTTTGTCTCCAAGAAATGGAGATTCTCCAAATGGCCAAAACACAAGTTTCACAAGCCATGAATTGGGTTGATAACTCTTTGAAGTTGCATGGCTTGGAGAGTGTGAGTATGGTCTCATCATTGAATCAAACAAGTGGTTTGGGTTTGAGAGATTGTGCTAAACTTTATGAGGAGAGTGAGTTTAGACTTAGGGATATGATGGTTGGAAGAAGGGGTTATAGTAGAGATGATGCTCTTATTTGGGTGAGTGCTTTGATGACAAATCATAGGACTTGTTTGGATGGGTTGAAGGAAAAAGGGTATGTTGGAGATAATCATGTTTTGGGTAGAAACTTGACAAGTTTGCTTGGCCAAATGCTTGTTTTGTATTCAAATAACAAAGTCAAAGGCAAAGAGCAATCTCAAAGAATTACAATATTAGAAGAAAACAATGGACTTTTAGAATCATGGAGTGTTGCAAACCATGAAGCAGATTTCACAGTGGCACAAGATGGTTCTGGAAATTATAGAACAATAAAAGAAGCAGTGGATGCACTTGCTTCAAGGGGGCATAGTCGTCCTTCAAGAGTTGTTATACATGTGAAAGCAGGAGTGTACCATGAAAAAGTTGAGATTGGAAGTAAGTTGCATAATGTTATGTTTGTTGGAGATGGAATTGACAAAACTGTTGTCACTGGAAATAGGAATTTTAAGAGTGGTTCCAGCACTCTTAACTCTGCCACATTTGATGTATCAGGGGATGGATTTTGGGCACGAGACATGACATTTGAGAACACAGCCGGACCACAAAACCACCAAGCAGTAGCCCTGAAGGTAAGTTCAGACTTATCAGTCTTCTACAGATGCAGCTTCAAAGCCTATCAAGACACACTCTACCTATTCTCGAATCGACAATTCTACCGCGACTGTCACATCTACGGCACAATCGACTTCATATTCGGGGACGCGGCCGCCGTACTCCAAAACTGCGACATTGTCGTCCGAAAACCAATGAGTTACCAATCAAACTTCATCACAGCTCAAGGACGCGACAATCCCAACGAACCGACCGGATTTTCGATACAAAACTGTCGGGTTAGGCCGGATTCGGAGTTTGCTACGGTGAAGGGTTCTGTGGAGACTTATTTAGGTAGGCCTTGGAAGAAGTATTCAAGGACAGTGTTTATGAAAAGTGATTTGGATGGTTTGGTTCATCCTAAAGGGTGGGGTGAATGGGAGGGGAGTTTCGCGATTTCGACTTTGTTTTATGGGGAGTATATGAATACTGGAAATGGTGCTGCTACTGGAAATAGGGTTAGTTGGCCTGGTTTTCATGTGTTGAAGAGTGTTGAGGAAGCTTCTCCTTTTACAGTTAGTAGGTTTTTGCAAGGTGGGAATTGGATTTCAGCTTCTGGGGTGCCATTTGATTCTGGAATTTGA 1476 0.4194 MTTYATVLFLLFVMFITTSFCLQEMEILQMAKTQVSQAMNWVDNSLKLHGLESVSMVSSLNQTSGLGLRDCAKLYEESEFRLRDMMVGRRGYSRDDALIWVSALMTNHRTCLDGLKEKGYVGDNHVLGRNLTSLLGQMLVLYSNNKVKGKEQSQRITILEENNGLLESWSVANHEADFTVAQDGSGNYRTIKEAVDALASRGHSRPSRVVIHVKAGVYHEKVEIGSKLHNVMFVGDGIDKTVVTGNRNFKSGSSTLNSATFDVSGDGFWARDMTFENTAGPQNHQAVALKVSSDLSVFYRCSFKAYQDTLYLFSNRQFYRDCHIYGTIDFIFGDAAAVLQNCDIVVRKPMSYQSNFITAQGRDNPNEPTGFSIQNCRVRPDSEFATVKGSVETYLGRPWKKYSRTVFMKSDLDGLVHPKGWGEWEGSFAISTLFYGEYMNTGNGAATGNRVSWPGFHVLKSVEEASPFTVSRFLQGGNWISASGVPFDSGI 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01031 491 ProSitePatterns Pectinesterase signature 2. 324 333 IPR033131 -
Vivi5g01031 491 Gene3D - 171 491 IPR012334 -
Vivi5g01031 491 SMART PMEI_2 11 141 IPR006501 GO:0004857
Vivi5g01031 491 Pfam Plant invertase/pectin methylesterase inhibitor 55 125 IPR006501 GO:0004857
Vivi5g01031 491 PANTHER PECTINESTERASE 29 481 - -
Vivi5g01031 491 FunFam Pectinesterase 171 491 - -
Vivi5g01031 491 Pfam Pectinesterase 177 476 IPR000070 GO:0030599|GO:0042545
Vivi5g01031 491 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 20 122 IPR035513 -
Vivi5g01031 491 CDD PMEI-like_4 6 143 - -
Vivi5g01031 491 SUPERFAMILY Pectin lyase-like 175 489 IPR011050 -
Vivi5g01031 491 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 144 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01031 Vivi-Chr5 25508627 25512921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01031 1 491 Carbohydrate Esterase AT3G60730 50.478 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01031 K01051 - gmx:100792852 703.745