Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01030 ATGATAGCTATTCGTTTGCTTGTAACACTTTTGGTTCCATTTCTACTTGCTTCTTTTGTTTCCTCATATTCCACAAGTGAGGTTAAACTATGGTGTAACCAAACCCCTAACCCTCAACCTTGTGAGTATTTCTTGAACAGTAACCCTTCTTACCAACACAAACTCATCAAACAAAAATCTGATTTCTTCAAACTTTCATTACAACTTGTTCAACAAAGAGCACTCAAAGCCCATGCAAACACTCTTTCATTACGCTCCAAATGCACCAACCCACGTGAAATATCTGCATGGGCTGATTGTGTTGACCTATATCAACAAACCATCCTTAAGCTCAACAAAACCCTAGACACTAAAACAAACTGTTCTCAAGTTGATGCTCAAACATGGCTAAGCACTGCTCTCACAAACCTTGACACATGTAAATCCGGATTCTATGAGCTTGGTGTTCAAGACTATGTACTTCCTCTCATGTCCAATAATGTTACTAAGTTGCTAAGCAATACTTTAGCTCTTAACAAAGTTCAATATCAAGAACCTAGCTACAAAAATGGCTTCCCAACATGGGTTAGGCCTGGTGATAGAAAGTTGTTACAATCATCTTCATCTTCTCAACCTAATGCAGTAGTGGCTAAAGATGGATCAGGAAAGTATACAACAGTTAGTGCAGCAGTAAACGCTGCACCAAAAAATAACAAAGGAAGGTATGTTATACATGTCAAGGCTGGTGTTTACAATGAACAAGTTGAGATCAAAGCAAAGAATATCATGTTGGTAGGAGATGGTATTGGAAAGACTATAATCACCGGAAGCAAAAGTGTTGGAGGAGGAACCACGACTTTTCGTTCAGCCACAGTTGCTGTTGTTGGGGATGGATTTATTGGTCAAGATATAACATTCAGGAACACTGCTGGTGCAAGCAACCATCAAGCTGTTGCACTTCGATCTGGATCAGACTTGTCTGTATTTTATAGATGTAGTTTTGAAGGTTATCAAGACACACTATATGTACATTCAGATAGACAATTCTACAAAGAATGTAACATTTACGGTACAGTCGACTTCATATTCGGTAATGCTGCTGCAGTGTTCCAAAACTGGAGTAACATATTTGCAAGAAACCCTCCAAACAAAGTGAACACAATTACAGCACAAGGTAGAATGGATCCAAATCAAAACACTGGTATTTCTATTCACAATTCTAGGGTTACCGCTGCTTCGGATTTGAAACCTGTTCAAGGTTCTGTTAAGACTTATCTTGGAAGACCATGGAAGCAATATTCTAGGACAGTTTTTATGAAGAGTTCTCTTGATAGTTTGATTCATCCAGCTGGTTGGTTGGAATGGAGTGGTGATTTTGCATTAAGGAGTTTATACTATGGTGAGTACATGAACACTGGTCTTGGTTCTTCTACAAGAAACCGAGTGAAATGGCAAGGTTATCATGTGATGACTAGTGCTTCTGAAGCATCGAAATTCACTGTTTCGAATTTCATTGCTGGAAACTCATGGTTACCTGCAACCAAAGTGCCTTTTACATCTACTCTTTAA 1548 0.3876 MIAIRLLVTLLVPFLLASFVSSYSTSEVKLWCNQTPNPQPCEYFLNSNPSYQHKLIKQKSDFFKLSLQLVQQRALKAHANTLSLRSKCTNPREISAWADCVDLYQQTILKLNKTLDTKTNCSQVDAQTWLSTALTNLDTCKSGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYQEPSYKNGFPTWVRPGDRKLLQSSSSSQPNAVVAKDGSGKYTTVSAAVNAAPKNNKGRYVIHVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIGQDITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSDRQFYKECNIYGTVDFIFGNAAAVFQNWSNIFARNPPNKVNTITAQGRMDPNQNTGISIHNSRVTAASDLKPVQGSVKTYLGRPWKQYSRTVFMKSSLDSLIHPAGWLEWSGDFALRSLYYGEYMNTGLGSSTRNRVKWQGYHVMTSASEASKFTVSNFIAGNSWLPATKVPFTSTL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01030 515 ProSitePatterns Pectinesterase signature 1. 231 250 IPR018040 -
Vivi5g01030 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 174 IPR035513 -
Vivi5g01030 515 SMART complete 239 417 IPR006633 -
Vivi5g01030 515 Pfam Pectinesterase 206 501 IPR000070 GO:0030599|GO:0042545
Vivi5g01030 515 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Vivi5g01030 515 NCBIfam pectinesterase inhibitor domain 7 173 IPR006501 GO:0004857
Vivi5g01030 515 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Vivi5g01030 515 SUPERFAMILY Pectin lyase-like 201 514 IPR011050 -
Vivi5g01030 515 CDD PMEI-like_3 30 173 - -
Vivi5g01030 515 SMART PMEI_2 23 171 IPR006501 GO:0004857
Vivi5g01030 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Vivi5g01030 515 Gene3D - 200 515 IPR012334 -
Vivi5g01030 515 FunFam Pectinesterase 200 515 - -
Vivi5g01030 515 PANTHER PECTINESTERASE 12 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01030 Vivi-Chr5 25499286 25501455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01030 1 515 Carbohydrate Esterase AT2G45220 66.216 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01030 K01051 - gmx:100783964 862.448