Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01029 ATGATAGCTATTCGTTTGCTTGTAACACTTTTGGTTCCATTTCTACTTGCTTCTTTTGTTTCCTCATATTCCACAAGTGAGGTTAAACTATGGTGTAACCAAACCCCTAACCCTCAACCTTGTGAGTATTTCTTGAACAGTAACCCTTCTTACCAACACAAACTCATCAAACAAAAATCTGATTTCTTCAAACTTTCATTACAACTTGTTCAACAAAGAGCACTCAAAGCCCATGCAAACACTCTTTCATTACGCTCCAAATGCACCAACCCACGTGAAATATCTGCATGGGCTGATTGTGTTGACCTATATCAACAAACCATCCTTAAGCTCAACAAAACCCTAGACACTAAAACAAACTGTTCTCAAGTTGATGCTCAAACATGGCTAAGCACTGCTCTCACAAACCTTGACACATGTAAATCCGGATTCTATGAGCTTGGTGTTCAAGACTATGTACTTCCTCTCATGTCCAATAATGTTACTAAGTTGCTAAGCAATACTTTAGCTCTTAACAAAGTTCAATATCAAGAACCTAGCTACAAAAATGGCTTCCCAACATGGGTTAGGCCTGGTGATAGAAAGTTGTTACAATCATCTTCATCTTCTCAACCTAATGCAGTAGTGGCTAAAGATGGATCAGGAAAGTATACAACAGTTAGTGCAGCAGTAAACGCTGCACCAAAAAATAACAAAGGAAGGTATGTTATACATGTCAAGGCTGGTGTTTACAATGAACAAGTTGAGATCAAAGCAAAGAATATCATGTTGGTAGGAGATGGTATTGGAAAGACTATAATCACCGGAAGCAAAAGTGTTGGAGGAGGAACCACGACTTTTCGTTCAGCCACAGTTGCTGTTGTTGGGGATGGATTTATTGGTCAAGATATAACATTCAGGAACACTGCTGGTGCAAGCAACCATCAAGCTGTTGCACTTCGATCTGGATCAGACTTGTCTGTATTTTATAGATGTAGTTTTGAAGGTTATCAAGACACACTATATGTACATTCAGATAGACAATTCTACAAAGAATGTAACATTTACGGTACAGTCGACTTCATATTCGGTAATGCTGCTGCAGTGTTCCAAAACTATAACATTTTTACAAAATTACCCTTACCTCCAAACAAAGTGAACACAATTACAGCACAAGGTAGAATGGATCCAAATCAAAACACTGGTATTTCTATTCACAATTCTAGGGTTACCGCTGCTTCGGATTTGAAACCTGTTCAAGGTTCTGTTAAGACTTATCTTGGAAGACCATGGAAGCAATATTCTAGGACAGTTTTTATGAAGAGTTCTCTTGATAGTTTGATTCATCCAGCTGGTTGGTTGGAATGGAGTGGTGATTTTGCATTAAGGAGTTTATACTATGGTGAGTACATGAACACTGGTCTTGGTTCTTCTACAAGAAACCGAGTGAAATGGCAAGGTTATCATGTGATGACTAGTGCTTCTGAAGCATCGAAATTCACTGTTTCGAATTTCATTGCTGGAAACTCATGGTTACCTGCAACCAAAGTGCCTTTTACATCTACTCTTTAA 1551 0.3849 MIAIRLLVTLLVPFLLASFVSSYSTSEVKLWCNQTPNPQPCEYFLNSNPSYQHKLIKQKSDFFKLSLQLVQQRALKAHANTLSLRSKCTNPREISAWADCVDLYQQTILKLNKTLDTKTNCSQVDAQTWLSTALTNLDTCKSGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYQEPSYKNGFPTWVRPGDRKLLQSSSSSQPNAVVAKDGSGKYTTVSAAVNAAPKNNKGRYVIHVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIGQDITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSDRQFYKECNIYGTVDFIFGNAAAVFQNYNIFTKLPLPPNKVNTITAQGRMDPNQNTGISIHNSRVTAASDLKPVQGSVKTYLGRPWKQYSRTVFMKSSLDSLIHPAGWLEWSGDFALRSLYYGEYMNTGLGSSTRNRVKWQGYHVMTSASEASKFTVSNFIAGNSWLPATKVPFTSTL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01029 516 ProSitePatterns Pectinesterase signature 1. 231 250 IPR018040 -
Vivi5g01029 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 174 IPR035513 -
Vivi5g01029 516 PANTHER PECTINESTERASE 12 508 - -
Vivi5g01029 516 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Vivi5g01029 516 SUPERFAMILY Pectin lyase-like 201 515 IPR011050 -
Vivi5g01029 516 NCBIfam pectinesterase inhibitor domain 7 173 IPR006501 GO:0004857
Vivi5g01029 516 Pfam Pectinesterase 206 502 IPR000070 GO:0030599|GO:0042545
Vivi5g01029 516 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Vivi5g01029 516 CDD PMEI-like_3 30 173 - -
Vivi5g01029 516 SMART complete 239 418 IPR006633 -
Vivi5g01029 516 SMART PMEI_2 23 171 IPR006501 GO:0004857
Vivi5g01029 516 FunFam Pectinesterase 200 516 - -
Vivi5g01029 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Vivi5g01029 516 Gene3D - 200 516 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01029 Vivi-Chr5 25499286 25501455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01029 1 516 Carbohydrate Esterase AT2G45220 65.703 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01029 K01051 - gmx:100783428 855.514