Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01005 ATGAAGTTACCTTTTGAGGAATTTCAAGTGAAGGGAGTGTTGGATTATTTCTCTTCAACTTCAAATTCAACTTCAACTTCTTCAACAGCTTCAGATTCATTTTCATTGCTTTTGAATCAACAACAACAACAGCAACATCAGAATTGGACAACGTTGGACAAACAAGATTATTGCTATGTGGAGCCTACTTCTGTTCTTGATTCAAGAAGAAGCCCTAGTCCACCGATTTCATCTTCAACAATGTCATCTTCTCTTGGTAGTGGTTCAAACAACAACAACACTTCGATGGTAGTTTCGGAGAATCTCGCCCGTCTTTCAAACTCGAACTCGAACGAAGAAGGGTTCGAGAACAGCGAAGAGAAATGTAGTGGTGGTGGTGGTGGTATGAGAATGGAGGATTGGGAGGGGCAAGATCAGTCTCTTTTGAGGTTAATCATGGGAGATGTTGAAGACCCTTCTGCTGGTTTGAACAAAATCTTACAAAACAGTGGTTGTGGTTCTGGAAACGCCGATTTTCATGGCGGTTTCGGTGTTTTGGAACATCATCAGCAACAACAACAAGGTTTGAACATGGACCCTTCTGTTGGGAATTACAATGTTTTTCCTTTCAATGCTGAGAATTTGGATAGTCACAATGTGAAACCTGGTCATGAATCTATGTTTGGTAACTATCCCATGTTGACATCGTCATCGACAACTTCCGGTGTGTTTTGTTCTCAGCAGCAGCAACAAGGGTTCGGCGTTGTGGATGAGAAGCCTCAAGTTATTAACCCTAATTTTATGATGAATCATAATCAAGTTCAATTTGCTGATAATCCGTCGTTCTTTGTTCCATTGCCATTTCCTCAAGTGCAAGAGCAACAAGTTTTTTCTTCTCAGAATCAGTTGAAACGGCCGCTTTTCGATGCGGTTGGACACAATTATCCGGTACCAAGGTTACCGCTTCTGGATTCTGGTCAAGAAATGTTTGCTCGGAGGCATCAGCAGCAGCATCAGCAAACACAGCTTCCATTGTTTCCAAATCATCATCTGCAGCAGCACCAGCACCAGCAATCGCCGGGTGTTCCCTTTGCGAAGCAGCAGAAGATGAGTTCTACTACTACCGCCGGAGACGATGCAAGCAATCAGGTTCAGCAGAGTATATTTGATCAACTATACAAAACTGCCGAGCTGATAGAAGCTGGTAATCCGGTTCAAGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCAATTGGTAAGCCTTTTCATAGGGCTGCTTTTTACACTAAGGAAGCTTTACAACTAATGCTTCATTCAAACAGTAACAACAATCTCAATGCTTTTTCGCCGATTAATTTCATATTCAAAATCGGTGCTTACAAGTCTTTTTCCGAGATATCGCCTGTTCTTCAGTTTGCCAACTTTACTTGTAATCAAGCCCTCATCGAAGCCTTGGAAAGGTTCGATCGAATTCATGTTATCGATTTCGATATCGGGTTTGGAGTACAATGGTCTTCTTTTATGCAAGAGCTTGTGTTAAGAGGTAACGGTACACCTTCTCTTAAGATTACCGCAGTTGTTTCGCCCTCGTCTTGCAACGAGATTGAGCTCAATTTCACCCGAGAAAATTTGAGTCAGTATGCGAAAGATCTCAACATGCAGTTTGAGTTCAACGCTTTGCACATCGAATCATTAAGCTCTCCGTCATTTCCTCTACCGGGTCATTTATTCGATAGCAACGAGGCCGTTGGTGTGAACTTTCCTGTTTCAAGTTTCTTAAACCATCCATCATGTTTCCCTCTGGCCCTCCACTTTCTCAAGCAGCTGAGGCCAAAAGTTATCGTCACACTGGACAAAAACTCCGACCGAATCGACGCGCCTCTTCCAACCAACACTGTTCATGTTCTTCAATCTTACTCGTCCTTGCTCGAATCACTAGATGCTGTTAACGTGAACCTCGACGTACTCCAAAAGATCGAGCGTCATTTCATTCAACCAACCATCAACAAAATTGTCCTCGGCCACAACAATCGCTCCCCCGACAAGCTACCTCCATGGAGGAACATGTTTCTTCAATCCGGCTTCTCTCCGTTCACATTCAGCAACTTCACGGAAGCGCAAGCCGAGTGTTTGGTTCAACGGGCACCGGTGCGAGGGTTTCAAGTGGAAAGAAAGCCTTCATCTCTTGTTCTATGCTGGCAGAGGAAAGAACTCATCTCAATTTCAACTTGGAGATGCTAA 2229 0.4374 MKLPFEEFQVKGVLDYFSSTSNSTSTSSTASDSFSLLLNQQQQQQHQNWTTLDKQDYCYVEPTSVLDSRRSPSPPISSSTMSSSLGSGSNNNNTSMVVSENLARLSNSNSNEEGFENSEEKCSGGGGGMRMEDWEGQDQSLLRLIMGDVEDPSAGLNKILQNSGCGSGNADFHGGFGVLEHHQQQQQGLNMDPSVGNYNVFPFNAENLDSHNVKPGHESMFGNYPMLTSSSTTSGVFCSQQQQQGFGVVDEKPQVINPNFMMNHNQVQFADNPSFFVPLPFPQVQEQQVFSSQNQLKRPLFDAVGHNYPVPRLPLLDSGQEMFARRHQQQHQQTQLPLFPNHHLQQHQHQQSPGVPFAKQQKMSSTTTAGDDASNQVQQSIFDQLYKTAELIEAGNPVQAQGILARLNHQLSPIGKPFHRAAFYTKEALQLMLHSNSNNNLNAFSPINFIFKIGAYKSFSEISPVLQFANFTCNQALIEALERFDRIHVIDFDIGFGVQWSSFMQELVLRGNGTPSLKITAVVSPSSCNEIELNFTRENLSQYAKDLNMQFEFNALHIESLSSPSFPLPGHLFDSNEAVGVNFPVSSFLNHPSCFPLALHFLKQLRPKVIVTLDKNSDRIDAPLPTNTVHVLQSYSSLLESLDAVNVNLDVLQKIERHFIQPTINKIVLGHNNRSPDKLPPWRNMFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISISTWRC 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01005 742 MobiDBLite consensus disorder prediction 66 113 - -
Vivi5g01005 742 MobiDBLite consensus disorder prediction 64 127 - -
Vivi5g01005 742 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 348 736 IPR005202 -
Vivi5g01005 742 Pfam GRAS domain family 383 741 IPR005202 -
Vivi5g01005 742 ProSiteProfiles GRAS family profile. 372 741 IPR005202 -
Vivi5g01005 742 MobiDBLite consensus disorder prediction 343 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01005 Vivi-Chr5 24066225 24069465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01005 381 742 GRAS Transcription Factor Family AT4G00150 54.670 5.69e-123 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi5g01005 GRAS 8.8e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01005 - - psat:127101146 1254.97