Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00978 ATGAATCCAACAAATCTTGTTCTTCTTTCATCTCAAAACTTGAAAGAATGTACAAACAATTTCAACCAAATCAATCTCATAGGGTTGACACAGTTTGGAAGATTGTTTAGAGGAAACTTCCATGGTCAACATGTCTTGGTGAAGATATTGGATGATGAAAAATTGAAGCACATAACTTCCAAATATCATGATGAAAATTTGATTCTCAAAGAGGAAATAAAGTTTTACACAAATCCAAATTTGAAAGATTGTCCTAACTTGGCTACTTTGATTGGTTATACTTGGGAAAGAGATATAAAAGGAATTGTTTATGATATTAATCCACTTGATACTTTGGATAATATAATCAAGAAAGATGGTATGAATTGGGTTCAGAGAATAAATGTAATTCATGAGATTGCTAAGTTCTTGAAATTCATACATGATCAAGAGAAACAAGACATGGTTTTGAATATTAATGCATCTCATATACTTCTTGATAAGGATTATAAGCCAAAGTTATTTGATTTGTTATTGCCTAGTGAAGTAAAAATGCTCAAGGAACAATTAAAAATGTCAACTAGCCACATTGATCCTTATTTTTCTTTAAGAGGTGGTGAGTGGAATAGAAGCAGTGAAGTGTATTCTTTTGGCATTATTTTGCTTGAACTAATAACCAAGAGAATTTCAAACAATGAAAACATAGACCACACAAGCTTAAACATGGATAATTTATTACATATTTGGGCCAAGAAAGAGTTCAAGCCAAATTGTTCTCTTGTTCACAAACATCTGCAAGAAGATTGGCTCTATAGTGCCAAAGATGGTGTTGCAATAACTCTACTTGCTTTGCAGTGCATAGAATTTTTTCCAGCAAACCGTCCTTTAATGAGTGATGTGTTGCAAAATCTAGAAAATCTTTCAGTGTTGCAACATTTGGTTGATGCTAGATCAAGTAAAAGGGAAAAGAAGTTCATTTCATCATGA 966 0.3209 MNPTNLVLLSSQNLKECTNNFNQINLIGLTQFGRLFRGNFHGQHVLVKILDDEKLKHITSKYHDENLILKEEIKFYTNPNLKDCPNLATLIGYTWERDIKGIVYDINPLDTLDNIIKKDGMNWVQRINVIHEIAKFLKFIHDQEKQDMVLNINASHILLDKDYKPKLFDLLLPSEVKMLKEQLKMSTSHIDPYFSLRGGEWNRSSEVYSFGIILLELITKRISNNENIDHTSLNMDNLLHIWAKKEFKPNCSLVHKHLQEDWLYSAKDGVAITLLALQCIEFFPANRPLMSDVLQNLENLSVLQHLVDARSSKREKKFISS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00978 321 Gene3D Phosphorylase Kinase; domain 1 2 105 - -
Vivi5g00978 321 Gene3D Transferase(Phosphotransferase) domain 1 109 318 - -
Vivi5g00978 321 Pfam Protein tyrosine and serine/threonine kinase 24 239 IPR001245 GO:0004672|GO:0006468
Vivi5g00978 321 SUPERFAMILY Protein kinase-like (PK-like) 13 302 IPR011009 -
Vivi5g00978 321 ProSiteProfiles Protein kinase domain profile. 21 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00978 321 PANTHER OS01G0588500 PROTEIN-RELATED 5 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00978 Vivi-Chr5 23186865 23189357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00978 14 306 Receptor kinase-like Gene Family AT4G23320 27.124 3.01e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi5g00978 PK_Tyr_Ser-Thr 1.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00978 - - gmx:102662076 480.715