Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00959 CATCAGAATCAAAACCCTTCATGGGTGGACGAGTTTCTCGACTTCTCATCCGCTAGGCGGGGAGCTCACCGTCGGTCTGTCAGCGACTCCGTTGTGTTCCTAGAATCGCCAATGCTCGATGATTGCAGCGGGAAAAATGGTGAAAATGAAAACAACATTAATGATGATGACCATGAGTTCGACAAGTTTGATGATGAACAGTTTATGTCCATGTTCAACGATGAAATAGCTGGTGTGCATAACATGCCGCCGATATTGTCCTCGTCGAATGCTTCGAGTCCTTCTGATCAGAACTTTGTCAACAATGAGAATGAGAATGAGATGATAAATAAGCAAGAAGAGAAGAAGGAGAGTGATTTGAGAGAGATGAAGAAAGAGGAGGATGATGAGAAGCAATTGAAAAATGAACCTGATGAGGTTGAAAGCCAATGCAAACAGGAAAACTCACAGCCTCAAAATAATAACAACAACAATTCATCTTCTTCTAATGACAGAATTACCGATCCTAAGAGAGTTAAAAGAATCTTGGCGAATAGGCAATCGGCGCCAAGATCGCGAGTGAGGAAGCTGCAATACATATATGAGCTTGAACGAAGTGTAACTTCATTGCAGGCCGAAGTTTCAATACTTTCTCCACGAGTTGCATTTTTGGATCATCAGCGTTTGCTTCTTAATGTTGACAATAGTGCTCTCAAGCAAAGAATTGCAGCTCTTGCTCAAGACAAGATTTTCAAAGATGGGAGGCTGAAGGATCTTATACTCCGACTAAGCTTCGTAGGAATGCATCAGCCTCTGCAAATATTAGCAACCTTGGTTCGCAAAGCAATCCTACAAACTCAGTTAGCTAGTCATCCAGTTGCATGTCGTCTCATGCTGGAAGAGAAGGAATGTGTTTGTGACATGACATTGAATTTGGTGCAACCCAAAAACCACCAGAGATGTGATGATGGAGTAACAGATAGAGATATATTTTGGACTCATCGTGATTCCATAAAGTTGTTCAACATGTTTCCCAATGTGCTCATAATTGGTTCGACGTATAAGACCAACAAGTATAGGCTTCCATTATTGGAAATTATTGGTGTTACCTCTAATGAGAAGACTTATTCTTCCGGGTATGCATTTCTAGAGTGCGAAAAAGAGGACAACTTTGCTTGGGCTTTAGAGGTATCACACTACAAAGAATGTGAGAAGTCGGGTTAA 1203 0.414 HQNQNPSWVDEFLDFSSARRGAHRRSVSDSVVFLESPMLDDCSGKNGENENNINDDDHEFDKFDDEQFMSMFNDEIAGVHNMPPILSSSNASSPSDQNFVNNENENEMINKQEEKKESDLREMKKEEDDEKQLKNEPDEVESQCKQENSQPQNNNNNNSSSSNDRITDPKRVKRILANRQSAPRSRVRKLQYIYELERSVTSLQAEVSILSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDGRLKDLILRLSFVGMHQPLQILATLVRKAILQTQLASHPVACRLMLEEKECVCDMTLNLVQPKNHQRCDDGVTDRDIFWTHRDSIKLFNMFPNVLIIGSTYKTNKYRLPLLEIIGVTSNEKTYSSGYAFLECEKEDNFAWALEVSHYKECEKSG 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00959 400 Pfam bZIP transcription factor 170 213 IPR004827 GO:0003700|GO:0006355
Vivi5g00959 400 SUPERFAMILY Leucine zipper domain 170 224 IPR046347 GO:0003700|GO:0006355
Vivi5g00959 400 CDD bZIP_plant_RF2 171 221 IPR044759 GO:0003700|GO:0006355
Vivi5g00959 400 MobiDBLite consensus disorder prediction 38 59 - -
Vivi5g00959 400 SMART brlzneu 166 230 IPR004827 GO:0003700|GO:0006355
Vivi5g00959 400 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 168 220 IPR004827 GO:0003700|GO:0006355
Vivi5g00959 400 FunFam Transcription factor VIP1 169 240 - -
Vivi5g00959 400 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 173 188 IPR004827 GO:0003700|GO:0006355
Vivi5g00959 400 Gene3D - 169 241 - -
Vivi5g00959 400 MobiDBLite consensus disorder prediction 83 169 - -
Vivi5g00959 400 Coils Coil 102 136 - -
Vivi5g00959 400 MobiDBLite consensus disorder prediction 107 143 - -
Vivi5g00959 400 Pfam MULE transposase domain 341 397 IPR018289 -
Vivi5g00959 400 MobiDBLite consensus disorder prediction 144 165 - -
Vivi5g00959 400 MobiDBLite consensus disorder prediction 83 106 - -
Vivi5g00959 400 PANTHER BASIC LEUCINE ZIPPER 34 3 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00959 Vivi-Chr5 22600964 22605462 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00959 2 247 bZIP Transcription Factor Family AT3G58120 57.588 3.61e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi5g00959 MULE 1.1e-10 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00959 - - vvo:131604354 757.288