Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00958 ATGATGGAAAAACACAAGTGCAAATATTGTTATAGAAGTTTCTCCAATGGAAGAGCATTAGGCGGACACATGAGATCACACATGATGAACCTACCAATTCCTCCCAAACCAAACGACTCACCACCATCACCATCACCACCGCCACCACCACCACCAACGATTCAACTCAGTTTCGAAGCCGAGTCAGATTCATCTCCTTCATCCTCATCTCTCTATAGCCTTAGAGAGAATCCAAAACGAAGCTTCATTTTCACAGATCCCAATCAATTCATCGACGCCGGTTCCATAATTCTCCAACAAGAAAGCGAAACCGAAACCGAAACTGAGTCGTCGAAGAATCCAACTCGTCCACGATCCAAACGAGTCAGGAAACTCGACACCGCGAAACCGAATGACTCGGTTCTGAGTTCTTCTTCGGATATAACTACCGAAGAAGACATCGCTTTTTGTCTCATGTTGCTCTCTCGCGACAATAACAACAATTGGCGATCTCAAACACATACACAAACACAAACACAAAGACAACAGCACAATTATCATGATCAAGATCATGAACAACTAGAACAGCATCATTATTACGTCGATGAAGACGAAGACGACGCTGACGCTGACGTAGAAGTCGAAGAAATCGAAGAAGAAGAAGAAAGTGAAGCTGAATCTGAGGAGGAACTGAAACCGATGAAGAAAGTACGAGGAAGATACAAATGCGACACGTGTAACAAAGTGTTTCGATCTTATCAAGCACTAGGAGGACACAGAGCGAGTCACAAGAAAACTAAACAACTTGCTGGCGATTCATCTTCACAGCACGATGAGAAAATCAACATTGAAAACATTAACGTTAATATTAATGTTAATGTTGAGAAGAAAATTCATGAGTGTCCTGTTTGTTTTAGAGAATTTGCTTCAGGTCAAGCACTTGGTGGACATAAGAGAACACATGGTATTGGAACATCGTTATCAGCAGCATCAGCACCAACATCAACAACAACAATAGCAGCGGTTACGGCATCAGCAGCAGCAGCAACAAACGTTGAGGTTGTTGTTCGAAGTTCTGCGAAATTCGGAGATAGTTTGTTAGATCTAAATCTTCCTGCTCCTATGGATGATGGTGATGGTGATGGTGGTGATGAAGGTGGTTCTGCGGTTTCCGATTCATAA 1161 0.4264 MMEKHKCKYCYRSFSNGRALGGHMRSHMMNLPIPPKPNDSPPSPSPPPPPPPTIQLSFEAESDSSPSSSSLYSLRENPKRSFIFTDPNQFIDAGSIILQQESETETETESSKNPTRPRSKRVRKLDTAKPNDSVLSSSSDITTEEDIAFCLMLLSRDNNNNWRSQTHTQTQTQRQQHNYHDQDHEQLEQHHYYVDEDEDDADADVEVEEIEEEEESEAESEEELKPMKKVRGRYKCDTCNKVFRSYQALGGHRASHKKTKQLAGDSSSQHDEKINIENINVNINVNVEKKIHECPVCFREFASGQALGGHKRTHGIGTSLSAASAPTSTTTIAAVTASAAAATNVEVVVRSSAKFGDSLLDLNLPAPMDDGDGDGGDEGGSAVSDS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00958 386 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Vivi5g00958 386 MobiDBLite consensus disorder prediction 57 73 - -
Vivi5g00958 386 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Vivi5g00958 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 292 314 IPR013087 -
Vivi5g00958 386 ProSitePatterns Zinc finger C2H2 type domain signature. 294 314 IPR013087 -
Vivi5g00958 386 SMART c2h2final6 292 314 IPR013087 -
Vivi5g00958 386 SMART c2h2final6 5 27 IPR013087 -
Vivi5g00958 386 SMART c2h2final6 234 256 IPR013087 -
Vivi5g00958 386 SUPERFAMILY beta-beta-alpha zinc fingers 233 314 IPR036236 -
Vivi5g00958 386 SUPERFAMILY beta-beta-alpha zinc fingers 4 32 IPR036236 -
Vivi5g00958 386 MobiDBLite consensus disorder prediction 100 137 - -
Vivi5g00958 386 MobiDBLite consensus disorder prediction 34 55 - -
Vivi5g00958 386 MobiDBLite consensus disorder prediction 105 128 - -
Vivi5g00958 386 MobiDBLite consensus disorder prediction 22 73 - -
Vivi5g00958 386 Coils Coil 203 223 - -
Vivi5g00958 386 MobiDBLite consensus disorder prediction 363 386 - -
Vivi5g00958 386 Gene3D Classic Zinc Finger 231 314 - -
Vivi5g00958 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 261 IPR013087 -
Vivi5g00958 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Vivi5g00958 386 Pfam C2H2-type zinc finger 5 28 - -
Vivi5g00958 386 Pfam C2H2-type zinc finger 292 314 - -
Vivi5g00958 386 Pfam C2H2-type zinc finger 233 258 - -
Vivi5g00958 386 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 371 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00958 Vivi-Chr5 22483245 22484685 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00958 2 370 C2H2 Transcription Factor Family AT3G60580 34.896 1.32e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g00958 zf-C2H2_6 6.4e-13 CL0361