Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00934 ATGCAACCAAGGGCAAGTACTGGAGCTTCTTTCCGTTTTAGTGCATCTAGTACGCCTAGCAATTCAAGTGGAGGATCTGATCCAGACGATGTTGAGTCACAAGGCGAGGTTTTCATATGGGGAGAGGTATTTGCGGATGGGGTTCCTTCCAAGACAGATGTGTTAATCCCTAAGCTGTTAGAGTCACACGTTATTCTCGATGTTCGTAACATTGCATCCGGTGCGAGTCACCTTGCTATATTAAACAAGAAAGGAGAGGTTTTTACTTGGGGAGAAGAGTCTGGGGGTAGACTTGGTCATGGAATTGATAAAAGTTCTGGTAAGCCTCGTCTAGTTGAGAATCTTGAAGATGTAACTTTGGATATTGTTGCATGCGGAGAGTTTCATACATGTGCTGTGTCAAAATCTGATGAATTTTTCACATGGGGTGATGGTACACATAATGCTGGACTTCTTGGACATGGTAATGAGGCTAGCCACTGGATACCAAAGAGTGTCGATGGCTTTTTGGATGGACTTCAAGTTGTATCTGTTGCATGTGGTACATGGCATTCAGCATTGGCAACCTCAAATGGAAAACTATTTACCTTTGGTGATGGAACATTTGGTGTTTTAGGCCATGGTGATCAAGAGAGTGTATCGTATCCAAAGGAAGTACAATTATTAGGTGGACTGAGGACTATTAAGGTTGCCTGTGGAGTATGGCACACTGCAGCTATTGTCGAGGTTGTTTTTCAATCTGGTTCAAATGTTTCATCATGGAAACTCTTCACATGGGGCGATGGCGACAAACATTGTTTAGGCCATGGAAACAAGGAAACCTATCTCCAACCGACACGTGTTTCGCCCCTTATTGAATATAATTTCCTGCAGATAGCATGTGGACACACCATGACTGTTGCTCTCACTACATCTGGTCATGTATTTACAATGGGAAGCACTGAAAATGGTCAGTTAGGAAATCCAAATTCTGCTGGGAAAGTACCTACTTTAGTCCAAGATAAGTTACTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGCTGTTTTGACATCAAGAAGCGAAGTATATACATGGGGAAAAGGTTCTAATGGAAGACTAGGACATGGTGACACAGATGAGAGAAAATCTCCTACCCTTGTGGTTGCCTTGAAAGATAGGAATATAAAAAATATCTCATGTGGTTCAAACTTTACATCTTGTATATGTATCCGTAAATCGGTCACTGGAGCTGATCAATCTGCTTGCTTTGGATGTAAACAAGCATTTGGTTTAACAAGAAAAAGACACAATTGTTATAATTGTGGATTGGTTTTCTGTCATACTTGTAGTTCTAAAAAGTCATTCAAAGCTGCATTGGCTCCAACATTTGAAAAACCTCATCGTGTGTGTGATATTTGTTATACTAAGCTTAAAGTTGTTGACATCAATGATCCTTCAAAGTTAAATGGAAAAGCTAACCCTTCTCACTATTCGACGAATGGTAGGGAAAGATTAGGCCAATGTACTTTAAGGTCTACAAGAACTCTCTTTTCTTCTTTTACTGAACCAGTGAAGTACCTTGAAATAAGGAATAATAAGCCTGGAACTGAATATGGTTCTGCTTCTTTCATAAGAGCTTCTTTAGTTCCATCTCTTTTGCAATTGAAAGATATTGCTTTTCCAAGTTCACTGAGTTCTATTCAAAGTGTTTTGAAGCCTTCTACTCCTCCTAGTTCATCACAAAATTCTTCATTCCCATACACATGTAGATCAAGTCCTTCTCCACCATATGTCACTCAAAGATTTTCCGGTGGTCTTATCAATAGTTTGAGCAGGACAAATGATGTACTTAACCAACGAGTCTCAAATTTGCAGAGCCAAATTCGAGATTTGGAGGAGAGAAGTGACGTGAAAGATTTGGAAATTCAGAAGCTTCAGAGAAAGACTACGGAAGTTATTGCCTGGGTTGCAGTGGAGTCGTCTTGTCATAGAGAAGCAAAACAATTTATTGAATCTACAAAACATCAGTTGAAGGAAATGACTGAGAAGGTACCAGCAGAAATTCCAGAACGTAATATCTTGAGTACTATCCAAACTCGAGCTGAAGATTTTCTCAAAGAATATTTTGAATCTGAAACATCAGAGTTGGAGTCCAAACAACAAAGTTCACATGACATATCTGCTGCAGATAATGACTCTTCAAAACTAGAAAATATCAGACTAGTAGAAAATGCCGACATTGTAGAAGTTGACTCTTGTCTAGATGAATCAAAGTTAGAGTGTTTGCAACAAAGTGCACATGACATATCTGCTGCAGATAATGATGATTCCTCTAAACTAGAAAATATCAGACTAGTAGAAAATGCCGACATTGTAGAAGTTGACGCTTGTCCAGATGAATCTAAGTTAGAGTGTTTGCAACAAAATGCACTTGATATATCTACCACACGTAGTGGCAATTTTGAACTACAAGATCATAGACTAGTAGAAAATGCTGACATTGTCGAAGTGGACTCTTGTCTAGATGAACCAAAGTTAGAGTGTTTGCAACAAATTGCACATGACATATCTGCTACAGATATAGACTCTTCTAAACTAGAAAATATCCAACTAATAGAAAATGCCGACATTATAGAAGTTGATTCTTGTCTTGCTGAATCAAAGTTAGAGTGTTTGCAACAAAATGCCCTTGATATATCTACCACAGATAGTGGCAATCTTGAACTACAAGATCATAGACTAGAAGAAAATGCTGATGTAAAAGTTGACAGTTGTCAAGATGAGGGAAATTTCCTCGACGAATGTAATAAACAAACATTGGAGTCAAAGCAACATAATTCACCTGATATAACTACCTCAGATAGTGAAACTTCTAAACTGCAAGAACAAATTTATGAAAAAATCGACAAGACTGCCAGATGTGATCAATCTGAGACTGGAATAAATGTTCGTCATGAAAGTAATGGATCGTCTATATCTAGTGTTGGAGAAGTGATGTCACCCCAAAGTTCAGAAAATGGTTCCATATCAGGGGACAGTTCAAGAGATGGGAGTCTACAAGAAACACAAGTCTTTGAAAAATTTGAGTCTGGTATTTACGTGTTACTCAAGCTAAGGGCTGACGGAATCAAAATTTTTAAAAGAGTTAAATTCAGTAAGCGCAAGTTCACTGAAAGCCAAGCAGAAGAATGGTGGAGCCAAAACAAAGGTAGAGTTCTTAGGAAATACTGTCCACGTCATCAAAAGCAAAATGGATCGTGTAACTTTACACCAAATGTTAAAGAAAATATTGAATCATCGCTTTCTTAA 3303 0.3839 MQPRASTGASFRFSASSTPSNSSGGSDPDDVESQGEVFIWGEVFADGVPSKTDVLIPKLLESHVILDVRNIASGASHLAILNKKGEVFTWGEESGGRLGHGIDKSSGKPRLVENLEDVTLDIVACGEFHTCAVSKSDEFFTWGDGTHNAGLLGHGNEASHWIPKSVDGFLDGLQVVSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDQESVSYPKEVQLLGGLRTIKVACGVWHTAAIVEVVFQSGSNVSSWKLFTWGDGDKHCLGHGNKETYLQPTRVSPLIEYNFLQIACGHTMTVALTTSGHVFTMGSTENGQLGNPNSAGKVPTLVQDKLLGEFVEEISCGAHHVAVLTSRSEVYTWGKGSNGRLGHGDTDERKSPTLVVALKDRNIKNISCGSNFTSCICIRKSVTGADQSACFGCKQAFGLTRKRHNCYNCGLVFCHTCSSKKSFKAALAPTFEKPHRVCDICYTKLKVVDINDPSKLNGKANPSHYSTNGRERLGQCTLRSTRTLFSSFTEPVKYLEIRNNKPGTEYGSASFIRASLVPSLLQLKDIAFPSSLSSIQSVLKPSTPPSSSQNSSFPYTCRSSPSPPYVTQRFSGGLINSLSRTNDVLNQRVSNLQSQIRDLEERSDVKDLEIQKLQRKTTEVIAWVAVESSCHREAKQFIESTKHQLKEMTEKVPAEIPERNILSTIQTRAEDFLKEYFESETSELESKQQSSHDISAADNDSSKLENIRLVENADIVEVDSCLDESKLECLQQSAHDISAADNDDSSKLENIRLVENADIVEVDACPDESKLECLQQNALDISTTRSGNFELQDHRLVENADIVEVDSCLDEPKLECLQQIAHDISATDIDSSKLENIQLIENADIIEVDSCLAESKLECLQQNALDISTTDSGNLELQDHRLEENADVKVDSCQDEGNFLDECNKQTLESKQHNSPDITTSDSETSKLQEQIYEKIDKTARCDQSETGINVRHESNGSSISSVGEVMSPQSSENGSISGDSSRDGSLQETQVFEKFESGIYVLLKLRADGIKIFKRVKFSKRKFTESQAEEWWSQNKGRVLRKYCPRHQKQNGSCNFTPNVKENIESSLS 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00934 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Vivi5g00934 1100 Gene3D - 252 411 IPR009091 -
Vivi5g00934 1100 Gene3D - 14 251 IPR009091 -
Vivi5g00934 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 483 IPR013083 -
Vivi5g00934 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 140 187 IPR000408 -
Vivi5g00934 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 191 240 IPR000408 -
Vivi5g00934 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 256 302 IPR000408 -
Vivi5g00934 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 305 354 IPR000408 -
Vivi5g00934 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 84 133 IPR000408 -
Vivi5g00934 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 359 406 IPR000408 -
Vivi5g00934 1100 MobiDBLite consensus disorder prediction 1 29 - -
Vivi5g00934 1100 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 414 476 IPR017455 -
Vivi5g00934 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 305 IPR000408 -
Vivi5g00934 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Vivi5g00934 1100 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 669 - -
Vivi5g00934 1100 PRINTS Chromosome condensation regulator RCC1 signature 194 208 IPR000408 -
Vivi5g00934 1100 PRINTS Chromosome condensation regulator RCC1 signature 68 81 IPR000408 -
Vivi5g00934 1100 PRINTS Chromosome condensation regulator RCC1 signature 295 313 IPR000408 -
Vivi5g00934 1100 PRINTS Chromosome condensation regulator RCC1 signature 353 374 IPR000408 -
Vivi5g00934 1100 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Vivi5g00934 1100 PRINTS Chromosome condensation regulator RCC1 signature 178 194 IPR000408 -
Vivi5g00934 1100 PRINTS Chromosome condensation regulator RCC1 signature 137 153 IPR000408 -
Vivi5g00934 1100 SUPERFAMILY FYVE/PHD zinc finger 414 476 IPR011011 -
Vivi5g00934 1100 Coils Coil 605 646 - -
Vivi5g00934 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 192 243 IPR000408 -
Vivi5g00934 1100 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 245 - -
Vivi5g00934 1100 SUPERFAMILY RCC1/BLIP-II 34 410 IPR009091 -
Vivi5g00934 1100 Pfam FYVE zinc finger 415 475 IPR000306 GO:0046872
Vivi5g00934 1100 Pfam Transcription factor regulating root and shoot growth via Pin3 1020 1074 IPR013591 -
Vivi5g00934 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 137 191 IPR000408 -
Vivi5g00934 1100 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 230 240 IPR000408 -
Vivi5g00934 1100 MobiDBLite consensus disorder prediction 1 32 - -
Vivi5g00934 1100 MobiDBLite consensus disorder prediction 568 590 - -
Vivi5g00934 1100 MobiDBLite consensus disorder prediction 976 1016 - -
Vivi5g00934 1100 MobiDBLite consensus disorder prediction 937 956 - -
Vivi5g00934 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 136 IPR000408 -
Vivi5g00934 1100 SMART fyve_4 409 477 IPR000306 GO:0046872
Vivi5g00934 1100 ProSiteProfiles BRX domain profile. 1020 1075 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00934 Vivi-Chr5 20568117 20575765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00934 934 1074 Major Intrinsic Protein MIP AT1G31880 29.054 5.89e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00934 - - mtr:11425711 1423.68