Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00916 ATGAAAAGTCATCATAACCATAATCATAATCTTCTTCATTCTTCTTTTACTTCTGATATCAACAACTCTATCATAGACTTAAATCCCAATCATCAATTCACAAAAAACATGGCGATATCACCTCAAACTTTCCCTACAACTAAACGACCACCTTCAGAGTCGTCGTTTATCTCTCCAAACCTCACCAACTTCAATCTTCTCCACTCTCTGTTACACCTCACCTACCAAATATCTTCATTAAACGCACCTCCTTGGTGTCGTTTTCTCTTAAACAAAACCTCATCTTCCACCATCCGCAAAACGCAGCTCCTCGGCGTCGTTTTCGAAGACCTAATTCGCAATGATTCAACTTCAATTTCAATTTCAACCACTATTTGTTCAAACTCTTTTGATCTTTGTCTTGAAGAAATGTACATAGTGTTGCACAGGATCAAAACGTTGATTGAAGATTGTTCCAATGGAAGCAAATTCTCTATTCTAATGCAAATTGAAATCATTGCGGATAATTTCAACAAACTCACCGGAGAATTATCGACGCTTCTAGATGTTTTTCCGATCCATCAGTTTAATCTCAACGACGACGTTTTGGAGATTGTTCATCTCATCAGAAAACAGTGTTCAGAATCAAAGCTTCTATTAGGCGAAGAACAAATCACTCTCCGAAACGATGTCGTTTCTGTTCTGGAAGGGATTAAAAGAGAGATTGTTCCGAATAAGGAGAAACTAGCTTCGATTTTCGAGAAACTGGAAATTCGCGATTCATCAACATGCAGAACTGAGATTGAAAATCTTCAAGAAGAGATTCAGAATCAAAGTGAAGAACAATCGAAATCAATTATATTTGCTTTGATCGGCCTAGTTCGTTACGCAAAGTGTGTTCTCTTCGGAGCATCAACGCCCTCGACGAGAATTGAAACATTCCGGCGGAATCAGTCGTTGGAGATTGTTGTTCCGGCGGATTACCGGTGTCCGATAAGCTTAGAACTGATTCGTGATCCTGTCGTCGTGGCAACAGGACAGACGTACGATCGTGCCTCCATCAAGTTATGGATTGAATCTGGACATAACACGTGTCCGAAAACAGGTCAGACCCTGGCCCACACGGATTTAATACCTAATCATGCTTTGAGAAACATGATAGCTTTGTGGTGCAGAGAACAGAAAATTCCGTTTGAAGATGACACGGTTACCGTTAAAATAAACGGCGGTGTTGCCAATAAAACAGCTTTGGAAGCTACGAGAATGACGGCGTCGTTTTTAGTCAACAAGTTGACATTGACTAACTCAATGGAAGATACAAACGGCGTCGTTTATGAGCTTCGGGTGTTAGCGAAAACTGATTCAGAAAGCCGAGCCTGTATAGCCGAAGCTGGAGCTATAGAGCTTTTGGTTCGGTTTTTAAGCTATGAAGTTGGTTCGAACAACCCGAGCCTACAAGTTAACGCCGTGACAACGATTTTAAATCTTTCTATCCTTGAAGCGAATAAGATAAAGATAATGGAAAGTGACGGCGCGTTAAATGGGATAACGGAGGTTTTACGAGCAGGTGCCACGTGGGAGGCGAAATCGAATGCTGCGGCGACGGTGTTTAGTTTAACGGGAGTTGTTGCTTTTAGAAAACGGTTAGGGAGGAAGACACGTGTCGTTAGTGGATTGGTTGAGTTAGCTAAAAGTGGACCTGAGGGAGCGAAGAGAGATGCTCTTGCGGCGATATTGAATCTGGCGTCGGATCGTGAAACGGTGGCGAGGTTAGTTGAGAGTGGCGCGGTTCAGATGACGGCGGAGATAATGCCTGGAATGCCGGAGGAAGCTGTGACAATACTTGAAGCGGTGGTAAAGCGGGGAGGATTGGTGGCGGTTGCGGCGGCTTTTATGGGGATAAAGAAATTGGGGAAGGTGTTGAGGGAGGGATCGGAGAGGGCAAGAGAGAGTGCGGCGGCGACGCTGGTGACGATGTGTAGGAAAGGTGGATCGGAGATTGTGACGGAGCTTGCGGGGATTCATGGTGTGGAGAGGGTGATTTGGGAGTTGATGGCGGTGGGAAGTGTGAGAGGGAGGAGGAAGGCGGCGACGTTGTTGAGGATTTTACGGCGGTGGGCGGCGGGTTTGGACGGTGGTGAAACGGAAGGGTTTTCTACAACTAATGCTTCTGTTAGTGCGTCAACTACCGTGGTTGTTCCAACTACTACTTCATCAGTACAATAG 2205 0.4472 MKSHHNHNHNLLHSSFTSDINNSIIDLNPNHQFTKNMAISPQTFPTTKRPPSESSFISPNLTNFNLLHSLLHLTYQISSLNAPPWCRFLLNKTSSSTIRKTQLLGVVFEDLIRNDSTSISISTTICSNSFDLCLEEMYIVLHRIKTLIEDCSNGSKFSILMQIEIIADNFNKLTGELSTLLDVFPIHQFNLNDDVLEIVHLIRKQCSESKLLLGEEQITLRNDVVSVLEGIKREIVPNKEKLASIFEKLEIRDSSTCRTEIENLQEEIQNQSEEQSKSIIFALIGLVRYAKCVLFGASTPSTRIETFRRNQSLEIVVPADYRCPISLELIRDPVVVATGQTYDRASIKLWIESGHNTCPKTGQTLAHTDLIPNHALRNMIALWCREQKIPFEDDTVTVKINGGVANKTALEATRMTASFLVNKLTLTNSMEDTNGVVYELRVLAKTDSESRACIAEAGAIELLVRFLSYEVGSNNPSLQVNAVTTILNLSILEANKIKIMESDGALNGITEVLRAGATWEAKSNAAATVFSLTGVVAFRKRLGRKTRVVSGLVELAKSGPEGAKRDALAAILNLASDRETVARLVESGAVQMTAEIMPGMPEEAVTILEAVVKRGGLVAVAAAFMGIKKLGKVLREGSERARESAAATLVTMCRKGGSEIVTELAGIHGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGETEGFSTTNASVSASTTVVVPTTTSSVQ 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00916 734 Coils Coil 254 274 - -
Vivi5g00916 734 Pfam U-box domain 317 388 IPR003613 GO:0004842|GO:0016567
Vivi5g00916 734 Gene3D - 395 624 IPR011989 -
Vivi5g00916 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 394 IPR013083 -
Vivi5g00916 734 ProSiteProfiles U-box domain profile. 316 390 IPR003613 GO:0004842|GO:0016567
Vivi5g00916 734 SMART arm_5 447 491 IPR000225 GO:0005515
Vivi5g00916 734 CDD RING-Ubox_PUB 318 370 IPR045210 -
Vivi5g00916 734 SUPERFAMILY RING/U-box 312 391 - -
Vivi5g00916 734 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 504 IPR000225 GO:0005515
Vivi5g00916 734 SMART Ubox_2 320 383 IPR003613 GO:0004842|GO:0016567
Vivi5g00916 734 FunFam RING-type E3 ubiquitin transferase 313 390 - -
Vivi5g00916 734 Pfam Armadillo/beta-catenin-like repeat 447 490 IPR000225 GO:0005515
Vivi5g00916 734 SUPERFAMILY ARM repeat 429 696 IPR016024 -
Vivi5g00916 734 PANTHER U BOX DOMAIN-CONTAINING 131 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00916 Vivi-Chr5 19436658 19439288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00916 48 730 U-box Gene Family AT5G01830 54.506 0.0 712