Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00912 ATGTTTAAGGGAAGAATTGGAGGTAAAGCTCAACTTGGATATGTTGAAACTGATCCTTCCGGTCGATATGGACGTTTTAGGGATGTCCTTGGCAAAGGAGCTATGAAGGTAGTTTATAAAGCATTTGATGAAATCTTAGGACTTGAAGTGGCTTGGAACCAAATCAAACTTGATGATGTTTTTCAATCACCGGATCAACTTCAACGCCTCTATTCAGAAGTTCATCTTCTAAAGAACTTGGATCATGATTCTATTATTACCTTCCATGGTACTTGGATTGATGTTGATCGTAGAACCTTCAACTTCATCACTGAATTGTTCACCTCTGGAACCCTAAGAGAGTATAGAAAGAAGTACCCTCGTGTAGATATCAGAGCAATAAAGAATTGGGCTCGTCAAATTCTAAATGGTTTGGTGTATTTACATAGCCATGATCCACCTGTAATACATAGAGACCTAAAGTGTGACAATATCTTTGTCAATGGCCATATGGGAAAGGTCAAGATTGGTGATTTAGGCCTTGCAGCAATTCTTCGTGGCTCCCAACATGCACATAGTGTCATCGGTACACCTGAATTCATGGCACCAGAATTGTATGAAGAGGAATACAATGAGTTGGTAGACATATACTCATTTGGCATGTGCATGATTGAGTTGTTCACTTCAGAGTTTCCATATAGTGAATGCACCAACCCTGCTCAAATATACAAAAAAGTTACCTCAGGGAAGCTACCAGAGGCATATTACAAGATTCAAGATAAAGAAGCCCAAGAGTTTGTTGGGAAGTGTTTGGCAAATGTATCAAAGAGATTGTCAGCAAAAGAGCTTTTGTTGGACCCGTTTTTAGCCACAGCCCAACATGAGTCACCTTTGATTAGTCCAACTTCACCTCAAAAAAACAATTTCAATGCAATAATTGCCAAAGAGGAACTTTCATTGAATGATCAAAGAAAGAACACATTCATGACAATCACAGGAAGTATGAATGAAGAGGATGATACTGTTTTTCTTAAAGTCAAAATTTCTAACAAAGAAGGGAACACAAGAAACATATACTTCCCATTTGACACCATAAAGGACACTGCAATTGAAGTTGCAAATGAAATGGTGAAAGAACTAGAAATTAGTGACTTGGAACCATTAGAGATTGCTGAGATGATTGAAGAAGAAATTTCAACTATAGTTCCAACATGGAGGGATTGTGACACTTCTAAGTATGAAAAACAACATAGTTTTAACTATGGTGAAGATGATGATAATGATCACCATCCTTTCTTCTCGCCGCCTTCTCGATCTTCGTCTCATGGTTCTCTCCCTATGTTTTGTGCTTCCTTCAACAACAATGGAAGTCTTTGTGGGAATCATTATTCTCTTGCTCAAGATTGGTTACAAGATGATCATCAATTTATGAATGATGATGCAAGCTCACAAACCTCAATAAACTCCATCAAGTGTTTCAATTTCCATTGCGACGATTCATGCAATGAAGACGAACACGATTCAACTCTTCAAGTAGGAGAAGAATCCTATTGTTGCAATCCAAAAAGTAACAACAAATGGACAAGATTTTGTCCTCCAAAAGAGATGGTGGAAGCTGGTTTCACCAAAATGTTTTGCAACATGAGAATGAATTCTCACACTCAAACTCACAATCATAGGAATCATCATGGAACAAGGAATGGATGTAAGAGACTAACAAGGATTAATTCATGTGTTGATGTGAGGAGACAACAATCGCAAAGATCTTTGATGGAAGAGATGCAAAAGAGAAGGGTGTTCAACACGGTTAATGCTATTGAGAATGTTGGGTTTCAAAATCCAGAAGGAGATGGATGTTTTTGTTGA 1845 0.3789 MFKGRIGGKAQLGYVETDPSGRYGRFRDVLGKGAMKVVYKAFDEILGLEVAWNQIKLDDVFQSPDQLQRLYSEVHLLKNLDHDSIITFHGTWIDVDRRTFNFITELFTSGTLREYRKKYPRVDIRAIKNWARQILNGLVYLHSHDPPVIHRDLKCDNIFVNGHMGKVKIGDLGLAAILRGSQHAHSVIGTPEFMAPELYEEEYNELVDIYSFGMCMIELFTSEFPYSECTNPAQIYKKVTSGKLPEAYYKIQDKEAQEFVGKCLANVSKRLSAKELLLDPFLATAQHESPLISPTSPQKNNFNAIIAKEELSLNDQRKNTFMTITGSMNEEDDTVFLKVKISNKEGNTRNIYFPFDTIKDTAIEVANEMVKELEISDLEPLEIAEMIEEEISTIVPTWRDCDTSKYEKQHSFNYGEDDDNDHHPFFSPPSRSSSHGSLPMFCASFNNNGSLCGNHYSLAQDWLQDDHQFMNDDASSQTSINSIKCFNFHCDDSCNEDEHDSTLQVGEESYCCNPKSNNKWTRFCPPKEMVEAGFTKMFCNMRMNSHTQTHNHRNHHGTRNGCKRLTRINSCVDVRRQQSQRSLMEEMQKRRVFNTVNAIENVGFQNPEGDGCFC 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00912 614 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Vivi5g00912 614 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 586 - -
Vivi5g00912 614 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00912 614 Gene3D - 327 400 - -
Vivi5g00912 614 Gene3D Transferase(Phosphotransferase) domain 1 107 288 - -
Vivi5g00912 614 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00912 614 SUPERFAMILY Protein kinase-like (PK-like) 26 283 IPR011009 -
Vivi5g00912 614 CDD STKc_WNK 22 282 - -
Vivi5g00912 614 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00912 614 FunFam probable serine/threonine-protein kinase WNK9 107 287 - -
Vivi5g00912 614 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vivi5g00912 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00912 Vivi-Chr5 19160298 19166484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00912 12 420 MAP Kinase Kinase Kinase AT3G51630 69.082 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi5g00912 Pkinase 3.2e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02415 6 105325396 105335122 Vivi5g00912 5 19160298 19166484 PCT