Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00885 ATGATGTTGAATCATGGGTCAAATGTTTCGGCTGAAGTGAGTGGTTGTTCAGATGAAGAACTATGGAAGACAATTGCAGGACAATTGGTGGATGTTCCTTGTGTTGGTCAAAGGGTTTTCTATTTTCCTCAAGGACACATGGAACAATTAGAGGCTTCGACGAATCAGGAACTGAATCAGAGGAGTCCTTTGTTGAAACTTCCTACAAAGATCCTTTGTCGCATCGTGAATATCCATTTACTGGCTGAACAAGAAACCGATGAAGTTTACGCGCAGATAACTTTGGTGCCGGAATCTAATCAAGAGGAGCCTACAGTCCCTGATCCGTGTGCCGATGAACCTCCGAGACCGAAAATTCACTCGTTCTGCAAGATCTTAACCGCTTCGGATACTAGCACCCACGGTGGCTTCTCTGTTCTGAGAAAACATGCAACGGAATGCCTTCCTCCTTTGGACATGTCTCAACCAACACCAACTCAAGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGTTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACCTTCTCACAACTGGATGGAGTACATTTGTGACTTCGAAACGATTAGTCGCTGGAGATACCTTCGTGTTTTTGAGAGGGGAAAACGGGGAATTACGCGTTGGAGTAAGGCGTCTTGCTCGTCAATCAAGTAGTATGCCATCGTCTGTGATTTCTAGCCAAAGCATGCATCTAGGAGTTCTTGCAACTGCCTCCCATGCCGTTGCAACTCAGACTCTTTTCGTTGTATATTATAAGCCGAGGACGAGCCAGTTCATTGTAAGCGTGAACAAGTACTTGTCAGGTATCAATAATAAGTTTGCTGTCGGCATGCGGTTCAAGATGAGGTTTGAGAGTGATGATTCTGCCGAGTCCGACAAAAGATTCTCTGGTACCATAGTTGGAGTCGAAGATATCTCTCCCCATTGGGAAAACTCAAAATGGCGATCGCTCAAGGTTCAATGGGATGAACCTGCGGCTATTCCAAGACCCGATAGGGTTTCACCATGGGACATAGAACCGTTTGTTTCTTCAGCTTCGACACCGACTGTTCAACCTACAGCTCCAAAGACGAAGCGGCCTCGACCAACCAATGAAACTCCTGACGTTGACACAACATCAGCCGCGTCTATTTTCTGGGATGCTAGGATGACACAAACTGATATGACACAACGTAGCGTTTTAGCCGAAAGCAAAAAAGGCGATAATAATACTAGTATGTGGCATCATAAGCAAACCGATATGATGAATACTAAAAATAGCAACAACAACAACGCTTTATTGAGGAATCATACAGAAGGAAGTTGGCTATCGTCTCCACGTTCCACCTGTCCTTCTCATTTGCATCACGACACAACCGATGATAGCAAGACTCTCCCAACCTGGCCTGTTTCGCAGTCTCAATCATCTATACCGAACGCTGATCATGTGCTTGATCAAGTTGATAAAGACAACAAAGTCGAGACAGCTACGGGTTGTCGATTGTTTGGAGTAGAACTTATTGATCATTCAAAAAACTCGGCTGCTGTAGGTAAAACATCTTCACATGCAGTAAATGTAACCGGAGCAACCGCGGAAGTTAGTTCCAGCACCATGTCCAGCACCGATACTGGTCGTAAGTCCGACATCTCAAAGGCTTATACGGAGCGGAAACAAGAATCGCAACAAGTATCGGCAAAGGAGACTCAGAGCAAGCAAATCTGTAGTAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTTGGTCGAGCGGTGGATTTAGCAATGTTGAACGGGTACGATCAACTTATCGGTGAATTAGAAGAGTTGTTCGACATAAAGGGACAGCTTCAACACAGAAACAAGTGGGAAATCGTCTTCACCGACGACGAAGGAGACATGATGCTTGTCGGAGACGATCCATGGCCTGAATTCTGTAACATGGTAAAAAGAATCTTCATTTGTTCAAGCCAAGATGTGAAGAAGATGAAATCCGGAAGCAAGTTACCAATCTCTTCCTCGATCGAAGAAGGGACCGTAATAAGCTCAGACACAACCGAACGATGA 2079 0.4512 MMLNHGSNVSAEVSGCSDEELWKTIAGQLVDVPCVGQRVFYFPQGHMEQLEASTNQELNQRSPLLKLPTKILCRIVNIHLLAEQETDEVYAQITLVPESNQEEPTVPDPCADEPPRPKIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQSSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLSGINNKFAVGMRFKMRFESDDSAESDKRFSGTIVGVEDISPHWENSKWRSLKVQWDEPAAIPRPDRVSPWDIEPFVSSASTPTVQPTAPKTKRPRPTNETPDVDTTSAASIFWDARMTQTDMTQRSVLAESKKGDNNTSMWHHKQTDMMNTKNSNNNNALLRNHTEGSWLSSPRSTCPSHLHHDTTDDSKTLPTWPVSQSQSSIPNADHVLDQVDKDNKVETATGCRLFGVELIDHSKNSAAVGKTSSHAVNVTGATAEVSSSTMSSTDTGRKSDISKAYTERKQESQQVSAKETQSKQICSRSRTKVQMQGVAVGRAVDLAMLNGYDQLIGELEELFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVKKMKSGSKLPISSSIEEGTVISSDTTER 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00885 692 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Vivi5g00885 692 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Vivi5g00885 692 Gene3D - 576 668 - -
Vivi5g00885 692 Gene3D - 119 223 IPR015300 -
Vivi5g00885 692 Pfam Auxin response factor 248 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g00885 692 SUPERFAMILY DNA-binding pseudobarrel domain 111 251 IPR015300 -
Vivi5g00885 692 FunFam Auxin response factor 283 356 - -
Vivi5g00885 692 Pfam AUX/IAA family 555 616 IPR033389 -
Vivi5g00885 692 Pfam AUX/IAA family 623 664 IPR033389 -
Vivi5g00885 692 FunFam Auxin response factor 575 668 - -
Vivi5g00885 692 MobiDBLite consensus disorder prediction 534 575 - -
Vivi5g00885 692 MobiDBLite consensus disorder prediction 443 480 - -
Vivi5g00885 692 ProSiteProfiles PB1 domain profile. 580 661 IPR000270 GO:0005515
Vivi5g00885 692 SUPERFAMILY CAD & PB1 domains 581 656 - -
Vivi5g00885 692 Gene3D - 283 358 - -
Vivi5g00885 692 MobiDBLite consensus disorder prediction 560 575 - -
Vivi5g00885 692 SMART B3_2 122 224 IPR003340 GO:0003677
Vivi5g00885 692 MobiDBLite consensus disorder prediction 534 551 - -
Vivi5g00885 692 MobiDBLite consensus disorder prediction 353 381 - -
Vivi5g00885 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g00885 692 FunFam Auxin response factor 120 224 - -
Vivi5g00885 692 CDD B3_DNA 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00885 Vivi-Chr5 17220334 17224949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00885 19 673 B3 DNA Binding Superfamily AT4G23980 57.186 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g00885 AUX_IAA 3.5e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00885 K14486 - gmx:100779003 1080.86