Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00883 ATGAACCTGTTGATTCTTTCATGTCATAGTTTTCAGATTCTATTTGCTCTTGGTGTGCTTTTCATGGCAACTCACATTGAAGCTTCTTCTTCTAGCTCAAAGGTTGAATACCTTCCTGGTTTTGAAGGACCACTTCCATTTGAACTTGAAACTGGGTACATAGGGTTAGGAGAAAGTGATGATGATGATGATATGCAAGTGTTCTACTATTTTGTTAAATCAGAGAATAATCCTCAAAAAGATCCTCTTATGCTTTGGTTAAGTGGTGGCCCTGGTTGTTCTTCATTTTCTGGCCTTGTCAATCAAATAGGTCCAATTGCATTTGAAAAAAAGGAGTACAACGGGAGCATTCCTAGTCTGATCTTGAGGCCACAATCATGGACAAAGCTATCCAATATTATGTTTGCTGATTTGCCATTTGGAACTGGTTTCTCATATGCAAAAAATGTCACTTCTCTTCGAAGCGATCGGAAGTTGGTTCACCATGTTCATCAATTTATTAGAAAGTGGTTGATTGATCATCCTGAATTTCTTTTAAATGAATTCTACATTGGAGGAGATTCATATGCTGGCATTCCTGTTCCCGCCGTTGTTCAAGAAATTTCAAATGGAAATGAAAAAGCTCTCCAACCATTGATAAATCTCAAGGGATATCTGCTAGGAAACCCTGTAACAACAGGTAAAGAAAAAAATGATCGAATCTCATATGCTCATGGAATGGGGCTCATTTCTAATGAACTATATGAGTCCTTACAACAAAATTGTAAAGGAGAGTACATTGATGTCAATTCTAAAAATGCATTATGTTTAAGAGACCTCAAATCTTTTGACAAGTGTCTAGTAGGAATTAAAATGTCTCATATTTTAGATCGCTATTGTGAAGATGAGCCACATCTATGGAGGAGATCTTTAACTCAAGAGTTTAAAGAATCTCTTAGTTATCATTTCACAGTGCCCGTGCCTGACTTAAATTGTCAAATTTATAAATTTTATCTCAACGAAAAATGGGCTAATGAAGAACGTGTTCGCAAAGCACTACACATTCGAGAGGGTACTATAAAAAAATGGAAACGTTGTTATCGGAATGATTTTGAGTTTTATATCCCAAACAGTGTTGAATTTCATGTGAATCTAAGCAAAAAAGGATTTCGCTCTCTGATATATAGTGGGGATCATGATTTAGTTGTTCCTTTTTTATCTACACAAGCATGGATAAAAAGTTTAAACTACTCCATTGTAGATGATTGGAGGTCATGGTTAATTAAAGATCAAGTAGCAGGATACACGAGGACTTATTCTAATCAAATGACATTTGCAACAATAAAGGGCTCGGGACATACAGGACCTGAATACACTCCTGAGCAAGGTTTTCTCATGTTTTCTAAATGGATATCTAATACACCTTTGTAA 1410 0.3589 MNLLILSCHSFQILFALGVLFMATHIEASSSSSKVEYLPGFEGPLPFELETGYIGLGESDDDDDMQVFYYFVKSENNPQKDPLMLWLSGGPGCSSFSGLVNQIGPIAFEKKEYNGSIPSLILRPQSWTKLSNIMFADLPFGTGFSYAKNVTSLRSDRKLVHHVHQFIRKWLIDHPEFLLNEFYIGGDSYAGIPVPAVVQEISNGNEKALQPLINLKGYLLGNPVTTGKEKNDRISYAHGMGLISNELYESLQQNCKGEYIDVNSKNALCLRDLKSFDKCLVGIKMSHILDRYCEDEPHLWRRSLTQEFKESLSYHFTVPVPDLNCQIYKFYLNEKWANEERVRKALHIREGTIKKWKRCYRNDFEFYIPNSVEFHVNLSKKGFRSLIYSGDHDLVVPFLSTQAWIKSLNYSIVDDWRSWLIKDQVAGYTRTYSNQMTFATIKGSGHTGPEYTPEQGFLMFSKWISNTPL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00883 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Vivi5g00883 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 135 IPR001563 GO:0004185|GO:0006508
Vivi5g00883 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 146 IPR001563 GO:0004185|GO:0006508
Vivi5g00883 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185|GO:0006508
Vivi5g00883 469 Pfam Serine carboxypeptidase 39 466 IPR001563 GO:0004185|GO:0006508
Vivi5g00883 469 FunFam Carboxypeptidase 372 466 - -
Vivi5g00883 469 FunFam Serine carboxypeptidase-like 11 29 469 - -
Vivi5g00883 469 Gene3D alpha/beta hydrolase 28 469 IPR029058 -
Vivi5g00883 469 SUPERFAMILY alpha/beta-Hydrolases 35 468 IPR029058 -
Vivi5g00883 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 453 IPR001563 GO:0004185|GO:0006508
Vivi5g00883 469 FunFam Carboxypeptidase 324 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00883 Vivi-Chr5 17150849 17178722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00883 29 64 Calmodulin-binding Proteins AT2G22960 61.111 9.33e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00883 K16296 - tpra:123922058 717.613