Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00882 ATGAACCTGTTGATTCTTTCATGTCATAGTTTTCAGATTCTATTTGCTCTTGGTGTGCTTTTCATGGCAACTCACATTGAAGCTTCTTCTTCTAGCTCAAAGGTTGAATACCTTCCTGGTTTTGAAGGACCACTTCCATTTGAACTTGAAACTGGGTACATAGGGTTAGGAGAAAGTGATGATGATGATGATATGCAAGTGTTCTACTATTTTGTTAAATCAGAGAATAATCCTCAAAAAGATCCTCTTATGCTTTGGTTAAGTGGTGGCCCTGGTTGTTCTTCATTTTCTGGCCTTGTCAATCAAATAGGTCCAATTGCATTTGAAAAAAAGGAGTACAACGGGAGCATTCCTAGTCTGATCTTGAGGCCACAATCATGGACAAAGCTATCCAATATTATGTTTGCTGATTTGCCATTTGGAACTGGTTTCTCATATGCAAAAAATGTCACTTCTCTTCGAAGCGATCGGAAGTTGGTTCACCATGTTCATCAATTTATTAGAAAGTGGTTGATTGATCATCCTGAATTTCTTTTAAATGAATTCTACATTGGAGGAGATTCATATGCTGGCATTCCTGTTCCCGCCGTTGTTCAAGAAATTTCAAATGGAAATGAAAAAGCTCTCCAACCATTGATAAATCTCAAGGGATATCTGCTAGGAAACCCTGTAACAACAGGTAAAGAAAAAAATGATCGAATCTCATATGCTCATGGAATGGGGCTCATTTCTAATGAACTATATGAGTCCTTACAACAAAATTGTAAAGGAGAGTACATTGATGTCAATTCTAAAAATGCATTATGTTTAAGAGACCTCAAATCTTTTGACAAGTGTCTAGTAGGAATTAAAATGTCTCATATTTTAGATCGCTATTGTGAAGATGAGCCACATCTATGGAGGAGATCTTTAACTCAAGAGTTTAAAGAATCTCTTAGTTATCATTTCACAGTGCCCGTGCCTGACTTAAATTGTCAAATTTATAAATTTTATCTCAACGAAAAATGGGCTAATGAAGAACGTGTTCGCAAAGCACTACACATTCGAGAGGGTACTATAAAAAAATGGAAACGTTGTTATCGGAATGATTTTGAGTTTTATATCCCAAACAGTGTTGAATTTCATGTGAATCTAAGCAAAAAAGGATTTCGCTCTCTGATATATAGTGGGGATCATGATTTAGTTGTTCCTTTTTTATCTACACAAGCATGGATAAAAAGTTTAAACTACTCCATTGTAGATGATTGGAGGTCATGGTTAATTAAAGATCAAGTAGCAGGATTCAGCATGAGAAATACGATCAAAATTTGCACTGTCCACTGCATATTGAATACAGAACGCAACCTTTCGATTTTTCTTCTTCAAATCCTTATAAAATGTCCTCTGAGCCTCAGTTGCATTGAAAGAGGGATCAAGGAAACCATTTGTAACCACTTCAAGGGTTTATCGAAAACAAACTAA 1461 0.3587 MNLLILSCHSFQILFALGVLFMATHIEASSSSSKVEYLPGFEGPLPFELETGYIGLGESDDDDDMQVFYYFVKSENNPQKDPLMLWLSGGPGCSSFSGLVNQIGPIAFEKKEYNGSIPSLILRPQSWTKLSNIMFADLPFGTGFSYAKNVTSLRSDRKLVHHVHQFIRKWLIDHPEFLLNEFYIGGDSYAGIPVPAVVQEISNGNEKALQPLINLKGYLLGNPVTTGKEKNDRISYAHGMGLISNELYESLQQNCKGEYIDVNSKNALCLRDLKSFDKCLVGIKMSHILDRYCEDEPHLWRRSLTQEFKESLSYHFTVPVPDLNCQIYKFYLNEKWANEERVRKALHIREGTIKKWKRCYRNDFEFYIPNSVEFHVNLSKKGFRSLIYSGDHDLVVPFLSTQAWIKSLNYSIVDDWRSWLIKDQVAGFSMRNTIKICTVHCILNTERNLSIFLLQILIKCPLSLSCIERGIKETICNHFKGLSKTN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00882 486 Gene3D alpha/beta hydrolase 28 440 IPR029058 -
Vivi5g00882 486 Pfam Serine carboxypeptidase 39 437 IPR001563 GO:0004185|GO:0006508
Vivi5g00882 486 SUPERFAMILY alpha/beta-Hydrolases 35 429 IPR029058 -
Vivi5g00882 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Vivi5g00882 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 135 IPR001563 GO:0004185|GO:0006508
Vivi5g00882 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 146 IPR001563 GO:0004185|GO:0006508
Vivi5g00882 486 FunFam Serine carboxypeptidase-like 19 28 298 - -
Vivi5g00882 486 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 423 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00882 Vivi-Chr5 17150843 17178027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00882 29 64 Calmodulin-binding Proteins AT2G22960 61.111 7.50e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00882 K16296 - tpra:123922058 647.121