Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00870 ATGGAACAGGATCAATGTTGGATTCAAACAAAGAGAAAATACTCAATGAGTTCTAATACAAATATTGTTACTATTCCTTCTTCTTCTACTTCTTGTTATGGTGATTCATGGGAAGAACAAGCTTTTGCTGAAGATGCAGCTGCAGGTTCACTTGGTGGATGTATATGGCCTCCAAGATCATATTCTTGTAGCTTTTGTAGAAGAGAGTTTAGGTCAGCACAAGCATTAGGTGGACATATGAATGTTCATAGAAAAGATAGAGCAAGACTAAAGCAACAAGCACCAAATGATCAAATTCTATTTCATCATCATCATCACGAGGTTGAAATCGAAAATCATCGTCTTCTTCATCAAAAGCCGATTATTCAAAGTGATCATAACTATTTGGCTTATAATAGTAACCTCTTCCCTAATCCACCTCTTTGTGGTTTGGTTTATGAGAAAACTAGCCCTAATTCTCGTCTCGATCTCTCCTCAGGCTCTAAGGATTTATTCAGAGATGAAACCCTAATTTCGTCCTCGGAATCATGGTTGAACTTACCTCGAGACGATAGGTTATGTTCGCCGAAGTTTCAACGAGAAGTTGATAATGATAATATTCTTGATGAAAAAGTCTCCAAGGGAATATTGGATTCTAGGTTAAGAGGTAAAAGGGAAAATGATGATGAAAGTGATTTATCAATGAGCTTGAATTTGGTTTTGTGTAGAGCTCATCCACTTGAAGAAGATGTGATGAATTGCAAGAAGAGGATGAAAATAGATTCTTCATCAAATCAATTATTCTCAAACTCAAAAAGCACTTTTGATCATAATCAACAAAATATCCAAGCAAAGATGTTCGAGTTTAGCCCTAATTCAATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGTACAAGATCCAAGATTCAGATATCTGCAAAGTTGTTTGTCATGATAACATTTACAGTAACTATATAG 957 0.3574 MEQDQCWIQTKRKYSMSSNTNIVTIPSSSTSCYGDSWEEQAFAEDAAAGSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKQQAPNDQILFHHHHHEVEIENHRLLHQKPIIQSDHNYLAYNSNLFPNPPLCGLVYEKTSPNSRLDLSSGSKDLFRDETLISSSESWLNLPRDDRLCSPKFQREVDNDNILDEKVSKGILDSRLRGKRENDDESDLSMSLNLVLCRAHPLEEDVMNCKKRMKIDSSSNQLFSNSKSTFDHNQQNIQAKMFEFSPNSIEELDLELRLGTRSKIQISAKLFVMITFTVTI 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00870 318 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Vivi5g00870 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Vivi5g00870 318 Pfam C2H2-type zinc finger 61 85 - -
Vivi5g00870 318 PANTHER OS07G0101800 PROTEIN 33 299 - -
Vivi5g00870 318 SMART c2h2final6 61 83 IPR013087 -
Vivi5g00870 318 Gene3D Classic Zinc Finger 58 118 - -
Vivi5g00870 318 SUPERFAMILY beta-beta-alpha zinc fingers 58 88 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00870 Vivi-Chr5 16675599 16679739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00870 36 298 C2H2 Transcription Factor Family AT2G37740 34.589 1.05e-29 113