Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00858 ATGTCTACTAGTACTAATACAACTGCTAATCCAAAGAGGAAGAAGCACAACGTGTACTTGAGTTTCTGCAACCAAGACACTGCTTCTTTCGCCAAGCGTATCTACGCCGCTCTTAGTAGAACTAGAAAAGCTCAATTTAATGTTTTCTGGTACGACGAGAAGCTTCAAAGTCGTGACAGAGAAATACCAACCTCTATGCTGAATGTCATAGGAGATTGCAAAGTTGCTGTTATTGTGTTTTCGAGGAATTATGTTAATTCAAGACCTTGTCTTCAAGAATTTGAGAAAATAACACAGTGTTGCTTAAACACAACTGGTCTTATTGTTCTTCCTTTGCTCTATGATGGTTACAACGACTACTCGTCGCTTGGAATTGGTGGAGAGGCTTTTCATGATCTTGTGTATACAATTTGGGTAAAGGAAACCTCGTTCGAAGAGGAAGATAAGTTCATGAGTTGGGTGGCAGCCATCACTAAAACTACTGCATATTCAGGAGTGATTGATTTTGCAGACAGTTATGGAAGGGAATATATTGGGGATATAGTTGAAAGTGTTATTCGTTTGATAAACAAGAAGAGTGACTTTTTGGGTGCTTTCTATACTGTGAGTTTAAAATATAGGGTGCAAGATGTGATTCAACTATTGAAACAATCAAGATATCCTCTCCTACTGGGGATATGGGGGATGGCAGGGATTGGTAAATCAACTATTGCTGAAGCCGTTTATAATCAGGTTGGTCCTTATTTTGAGTACAAGTTCTTGCTCGATAATGTCAGGGAAGTTTGGAAAACAGATGGAGGTGTAGTTTCTTTACAAGAGAAACTTCTTTCTTATAGGGGCAAACCAACTGAAACAAAGATAGGTACGGCTGAATCAGGAAAAGTTGTTTTAAAAGAAAGACTTCATAATAAAAGGGTACTTCTTGTACTTGACAATGTTGATAAATTGGAGCAGCTAAAGTCTTTGTGCGGAAATCGGGATTGGTTTGGTCCAGGTAGCAAAATAATCATCACGACCAGGGATAGGAATCTACTCACGAAGCATGGAGTTGACCATATATATAGAGTGAAAGAATTGGAAGAAAGTGAATCGATTGAGCTTTTTAATTGGTGTGCATTCAGCCAAGTAACAACTCCCCAAGACAGTTTTGGTGAACTTTCTAGACAATTAGTTGCTTATTCTAGGGGATTGCCTCTTGCTCTTAAAGCCCTCGGGGGGTTTTTGCACGGAAAGGAAGTACTTGAATGGAAAGGTGTATTGAGGAGTCTCGAAAGATTTTCCTTCCCAGATCAAGAAGTACTACATGCTCTAGAAACGAGTTTTGATGATTTGAGTAATGAAGAGAAACAAATATTCCTTGATATAGCATGTTTCTTTAACAGGATGGACCAAAATGATGTACTTCATACATTAAATAGGTCGACACAATGCACTAATCTTCAAATAAGTCTCCTTGAAGACAAGAGCCTTTTAACCATTGATAAGAATAACAAGCTTGGAATGCATGTTTTGCTACAAGCCATGGCAAGAGATATCATTAAGAGGGAATCAAGTAATAAGACTGACCAGCCAAAGATGTACGACGTGTTCTTGAGTTTTAGAGGGGAAGACAGTCGTGCAAAGTTCATGTCACACCTCTATTCCTCTCTTCAAAATGCGGGAATTCATGCTTTCAGAGACAATGATGAGATACCACGAGGAGATCACATCTCAATCTCACTGTTGCGAGCAATCGGACAATCTAGAATTTCCATCATTATTTTGTCTTCAAATTATGCTAATTCTCGATGGTGTATGCTAGAGTTGGTTAAGATAATGGAGATTGGTAGAACAAGGGGTATGGTGGTTATGCCTGTGTTCTATGACGTAGATCCCTCAGAAGTACGCCATCAGACAGGTCAATTTGGAGAAGTTTTTGGAGATCTTATCAAAACAATATCAGTGGATGAATCCACAAAGACTAATTGGAGAAGAGACCTCATTGATATTGGTGGCATAGCAGGGTTTGTACTTAGAGATTCCAGGAATGAGAGTGCAGATATCAAGAATATTGTTGAACATGTCACCCGTTTGCTACATAGGACAGAGTTATTTGTTGCTGAACATCCAGTGGGTGTAGAATCTCGTGTGGAAGCTGCGACTAAGTTACTAAATCTTCAAAAATCAGATGTTTTACTTTTAGGGATATGGGGAATGGGGGGTGTTGGTAAGACAACCATTGCCAAATCCATTTATAATCAAATTGGGAGCAAATTTGAAGGAAGGAGCTTCCTTCTAAATATAAGAGAATTTTGGGAGACAAATATTAATTTAGTCTCTCTACAGCAACAGGTACTTTGTGATGTTTACAAAACTACGACATTCAAGATACATGACATAGAATCAGGGAAAAATATATTGAAGGAAAGACTTGCACAAAATAGGGTACTTGTTGTGCTTGATGATGTGAATGAACTGGACCAACTAAAGGCTTTGTGTGGAAGCCGCGAATGGTTTGGTCCGGGGAGTAGAATAATCATCACAACAAGAGACATGCATCTTCTTAGATCATGTAGAGTTGATCAAGTGTATACTGTAGAAGAAATGGGGGAAAGTGAATCTCTTGAGCTTTTCAGTTGGCATGCATTCAAGCAACCTAGTCCAACAAAAGATTTTGCAACACATTCAAAAAATGTGATTACTTATTCCGGGAGATTGCCACTAGCACTTCAAGTCCTTGGGTCCTATTTGTCTGACTGTGAAATAACAGAGTGGCACAAAGCTTTGGACAAACTCAAATGTATACCCCATGATCAAGTACATAAGAAGCTAAAAGTAAGCTTCGATGGTTTAAAAGATGTTACAGAAAAACAAATATTCCTTGATATAGCTTGTTTCTTTATTGGGATGGACAAAAATGATGTAATACAAATATTAAATGGATGTGGTTTTTTTGGTGAGATTGGAATTAAAGTCCTTGTAGAGCGGGCTCTTGTAAGTGTTGACAATAGGAACAAGCTTAGAATGCATTATTTGTTGAGAGACATGGGAAGACAAATAATTTATGAGGAGTCACCATTTGATCCTGAGAAGCGCAGTAGGTTGTGGCGCCCAGAAGAAGTGTTTGATTTATTATCAAAGCATAAGGGAACAGAAGCTGTCAAGGGACTGGCTTTGGAGTTTCCAAGAAAAAATGCAGTTTGTCTGAGTACCAAAGCATTTAAGAAGATGAATAAACTTAGATTGCTTCAACTTGCAGGGGTGCAGCTTGATGGAGATTTTAAATATCTTTCAGGGGATCTTAGATGGCTGCACTGGCGTGGGTTTCCATCAACTTACACTCCTGTAGAATTTCAGCAAGGAAGTCTAGTTTCCATCGAATTAAAATACAGTCATCTCAAACAAATATGGAAGAAGAGTCAGGTGCTTGAGAATCTAAAAATTCTTAATCTTAGTCATTCTCGGGATTTGACTGAAACTCCATACTTTTCGTTTTTACCTAATCTTGAAAAGCTAGTACTCAAAGACTGTCCAAATTTGTCTGAGGTCTCCCAAAGTATTGGATCTCTCCATAAACTTCTTCTAATAAATTTGACAGACTGCACAAGTCTTCAGAATCTTCCGATAAGCATTTATAAATTAAAATCTCTAGAATCTTTGATTCTCTCTGGATGTTCCAAGATCAACAAATTGGAGGAGGACTTGGAACAAATGGAATCGTTGACAACCTTGATTGCGGACAAGACTGCCATAACAAAAGTGCCCTATTCAATAGTAAGATTAAAAAACATTGGATATATTTCTATTTGTGGCTTTGAAGGATTTTCACGTGATGTATTTCCTTCTCTCATTCGGTCTTGGCTCTCACCATCAAGTAATGTGATTTCCCTAGTTCAGACATCTACGTCAATGTCATCTCTTGGTACTTTCAAGGACCTTCTAAAGCTTCGAATTCTTTGTGTGGAGTGTGGCTCAAAACTTCAACTAACTCAAGATGTAGCAAGAATTTTTGATGCATTAAAAGCCACATTTTTTCATAAATTTGAAGCAAATGCAAGGGAAACTACATCACAAATCTCTGATATACATGCTTCTCCTTTAATTGACGACTTGCTTGGTCAAGTTCACATTTCAGGGTCCAATAATTACTTGAAATCTCTCTTAATTCAAATGGGAACAAAATGCCAAGTCTCTAATATTACCGAATACAATATTTTTCAGACTGCAGATGCGTTTTGGGATTCATTTGTGCTCCCCTGTGACAATAATTCTGATTGGTTAACTTTCCGTTGCAAAGGTCGTGGCATAGTGTTTGATCTCCCAACAAAAAAAGGGCATAACCTGAAGAGTATGTTGCTGCTCGTAGTCTATTCCTCTTCCCCGGACACCATAACTTCAAAAGGTTGCCAAGGTGTGTTGATCATAAATTTCACAAAGGCAACCATTCATGCCTGCAAAAGAGATACGCTAACCTCCTTTGAGGATGAGGATTGGCAGAGCATAACATCAAATCTAGAACCTGGTAACAAAGTGGGGGTTATGGTAGTTTTTGGGGAGGGATTTATTGTAAAGTTCACATCAATATCTCTCTTATATGATGAACCGATCAACAAAGAAATGGAACACTGCAATGCAGAATACGGGGAGGACGATGTTATTGTTTCTAGTGATGGCGACAAGGATGTTAGTGATTATGTTAATGTATCAATGGATAACGATGTTATTAGTCCCGGTGAAGATGACAATATTAGTGAACATAAGCACTCACATGCAGCGGATAAGAATTCTACTCTTTCGCATGATGATGCCATGGAAGCAAATAAGATTTATGCTGTCTCTGGTGGCGGTGATATACCACCAGATAACATTGTTCCCATTTCTAGAGAAAATGAAAACGTGAGTGATAGTAACAACGGGGATTTGGTAGATAGGGATGCTAATGTTTCCGGTAAAGCATATAAGAATGTTGTTGTTTCTAGTGGAGATAAAAATAGAATTCGTAGACTCTTCACCAAGCTTCCTTCCCTTGTTCGTGCTGTTCTGATCTCACGCTCTTTCTGGTGCAGTCTGATTTCCATTCTGGTTTGGATCACTTGCCGTGGTTTTAAGAAGCGGCGTAGTCGAAATATCCTTACAAGAAAATGTAGATCTACACAAAGGGGTACATGGCTAATGGATTGTGCTCACAAGCTTTTTACATACAAGAAGGCCAACAAAGCTCACAGCCTCAGCCGTTCAGAGTTAAGCTTATATGGCATGAAGTAG 5244 0.386 MSTSTNTTANPKRKKHNVYLSFCNQDTASFAKRIYAALSRTRKAQFNVFWYDEKLQSRDREIPTSMLNVIGDCKVAVIVFSRNYVNSRPCLQEFEKITQCCLNTTGLIVLPLLYDGYNDYSSLGIGGEAFHDLVYTIWVKETSFEEEDKFMSWVAAITKTTAYSGVIDFADSYGREYIGDIVESVIRLINKKSDFLGAFYTVSLKYRVQDVIQLLKQSRYPLLLGIWGMAGIGKSTIAEAVYNQVGPYFEYKFLLDNVREVWKTDGGVVSLQEKLLSYRGKPTETKIGTAESGKVVLKERLHNKRVLLVLDNVDKLEQLKSLCGNRDWFGPGSKIIITTRDRNLLTKHGVDHIYRVKELEESESIELFNWCAFSQVTTPQDSFGELSRQLVAYSRGLPLALKALGGFLHGKEVLEWKGVLRSLERFSFPDQEVLHALETSFDDLSNEEKQIFLDIACFFNRMDQNDVLHTLNRSTQCTNLQISLLEDKSLLTIDKNNKLGMHVLLQAMARDIIKRESSNKTDQPKMYDVFLSFRGEDSRAKFMSHLYSSLQNAGIHAFRDNDEIPRGDHISISLLRAIGQSRISIIILSSNYANSRWCMLELVKIMEIGRTRGMVVMPVFYDVDPSEVRHQTGQFGEVFGDLIKTISVDESTKTNWRRDLIDIGGIAGFVLRDSRNESADIKNIVEHVTRLLHRTELFVAEHPVGVESRVEAATKLLNLQKSDVLLLGIWGMGGVGKTTIAKSIYNQIGSKFEGRSFLLNIREFWETNINLVSLQQQVLCDVYKTTTFKIHDIESGKNILKERLAQNRVLVVLDDVNELDQLKALCGSREWFGPGSRIIITTRDMHLLRSCRVDQVYTVEEMGESESLELFSWHAFKQPSPTKDFATHSKNVITYSGRLPLALQVLGSYLSDCEITEWHKALDKLKCIPHDQVHKKLKVSFDGLKDVTEKQIFLDIACFFIGMDKNDVIQILNGCGFFGEIGIKVLVERALVSVDNRNKLRMHYLLRDMGRQIIYEESPFDPEKRSRLWRPEEVFDLLSKHKGTEAVKGLALEFPRKNAVCLSTKAFKKMNKLRLLQLAGVQLDGDFKYLSGDLRWLHWRGFPSTYTPVEFQQGSLVSIELKYSHLKQIWKKSQVLENLKILNLSHSRDLTETPYFSFLPNLEKLVLKDCPNLSEVSQSIGSLHKLLLINLTDCTSLQNLPISIYKLKSLESLILSGCSKINKLEEDLEQMESLTTLIADKTAITKVPYSIVRLKNIGYISICGFEGFSRDVFPSLIRSWLSPSSNVISLVQTSTSMSSLGTFKDLLKLRILCVECGSKLQLTQDVARIFDALKATFFHKFEANARETTSQISDIHASPLIDDLLGQVHISGSNNYLKSLLIQMGTKCQVSNITEYNIFQTADAFWDSFVLPCDNNSDWLTFRCKGRGIVFDLPTKKGHNLKSMLLLVVYSSSPDTITSKGCQGVLIINFTKATIHACKRDTLTSFEDEDWQSITSNLEPGNKVGVMVVFGEGFIVKFTSISLLYDEPINKEMEHCNAEYGEDDVIVSSDGDKDVSDYVNVSMDNDVISPGEDDNISEHKHSHAADKNSTLSHDDAMEANKIYAVSGGGDIPPDNIVPISRENENVSDSNNGDLVDRDANVSGKAYKNVVVSSGDKNRIRRLFTKLPSLVRAVLISRSFWCSLISILVWITCRGFKKRRSRNILTRKCRSTQRGTWLMDCAHKLFTYKKANKAHSLSRSELSLYGMK 1747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00858 1747 Gene3D - 691 857 IPR027417 -
Vivi5g00858 1747 Gene3D - 196 352 IPR027417 -
Vivi5g00858 1747 Gene3D - 358 445 IPR042197 -
Vivi5g00858 1747 Gene3D - 862 945 IPR042197 -
Vivi5g00858 1747 Pfam NB-ARC domain 710 931 IPR002182 GO:0043531
Vivi5g00858 1747 Pfam NB-ARC domain 206 429 IPR002182 GO:0043531
Vivi5g00858 1747 SUPERFAMILY Toll/Interleukin receptor TIR domain 518 666 IPR035897 -
Vivi5g00858 1747 Gene3D Ribonuclease Inhibitor 1037 1336 IPR032675 -
Vivi5g00858 1747 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 527 1320 IPR044974 GO:0006952
Vivi5g00858 1747 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 165 IPR035897 -
Vivi5g00858 1747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 455 IPR027417 -
Vivi5g00858 1747 MobiDBLite consensus disorder prediction 1568 1588 - -
Vivi5g00858 1747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 956 IPR027417 -
Vivi5g00858 1747 ProSiteProfiles TIR domain profile. 14 137 IPR000157 GO:0007165
Vivi5g00858 1747 ProSiteProfiles TIR domain profile. 525 692 IPR000157 GO:0007165
Vivi5g00858 1747 SMART till_3 526 666 IPR000157 GO:0007165
Vivi5g00858 1747 SMART till_3 15 160 IPR000157 GO:0007165
Vivi5g00858 1747 Pfam TIR domain 15 131 IPR000157 GO:0007165
Vivi5g00858 1747 Pfam TIR domain 527 689 IPR000157 GO:0007165
Vivi5g00858 1747 MobiDBLite consensus disorder prediction 1572 1588 - -
Vivi5g00858 1747 SUPERFAMILY L domain-like 1001 1316 - -
Vivi5g00858 1747 Gene3D - 519 690 IPR035897 -
Vivi5g00858 1747 FunFam Disease resistance protein (TIR-NBS-LRR class) 523 694 - -
Vivi5g00858 1747 SUPERFAMILY "Winged helix" DNA-binding domain 432 517 IPR036390 -
Vivi5g00858 1747 Gene3D - 10 195 IPR035897 -
Vivi5g00858 1747 PRINTS Disease resistance protein signature 1134 1150 - -
Vivi5g00858 1747 PRINTS Disease resistance protein signature 896 910 - -
Vivi5g00858 1747 PRINTS Disease resistance protein signature 726 741 - -
Vivi5g00858 1747 PRINTS Disease resistance protein signature 803 817 - -
Vivi5g00858 1747 SMART AAA_5 723 860 IPR003593 GO:0016887
Vivi5g00858 1747 SMART AAA_5 220 359 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00858 Vivi-Chr5 16456393 16477177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00858 67 529 WRKY Transcription Factor Family AT4G12020 27.837 3.34e-39 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00858 - - mtr:11411578 2345.08