Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00855 ATGACTTGGGTGGAAGCAATTACTAAATCTTCGCAATATCCAACAGATTTCGTTCCCACAAACGAGAATCAGTATGATTGTATCAAGAGTGTAGTTGAACGTGTTATTTGTGCGCTATACAAGACAAGACCCGAACTCTCGACTACTTTCTATACACTGAGTGTAAAATCTGGGGTGCAAGACGTGATCCAACTATTGAAACAATCAAAATATCCTCTCGTTATAGGGATTTGGGGGAAAGCAGGGATTGGTAAAACAAGCATTGCCACGACCATTTATGATCTCATTGGTCCTTATTTTGAGGGAAAATGCATGTTCACTAATGTCAGTGGAGTTTGGGGACGAAGTAATGGTCCAGTTTCTTTACAAAAAGAACTTCTTTTTTATGTCAACAAAACCACTGCACTCGAAAATGTGACTTTAAAAGAAAACCTTCGACATAAAAGGGTACTTCTTATACTTGAAGATGTTGATAAATTGGAGCAGCTAAATGCTTTGTGTGGAAGTCGTAACTGGTTTGGTGCAGGTAGCAAAATAATCATCACAACAAGAGATAGACGTCTACTCAAAGAGTATCGAGTTGACCATATATATAGAGTGAAAGAATTGGACAAAAGTGAATCGCTTGAGGTTTTCAAGTGGGGTGCATTAGGAAAAGAAACAACTTCTCCAGAAAATTTCGACGAACTTTCCAGAGAGGTAGTTGCTTATTCTGGGGGATGGCCTCTTGCTCTTATAGCCCTAGGGAGGCTTATGCATGGAAAGGAAGCCCTTCAGTGGAAAGGTGTGTTATGGAGTCTCAAAAATTTGTCCATTCCAGCTCCACGACTACTGAGTACCTTAGAAAAGAGTTTTAATGAGTTGAGTGATAACGAGAAACAAACATTCCTTGATATAGCAAGTTTCTTTATTGGGAAGAACCAAAATGATGTACTCCAAATATTAAATAGGTCAATACAAAACGCGGCTCTTCAAATAAGCCTTCTTGAAGACAAGAGCCTTGTAACCATCGTTGAGAATAACAAGCTTGAAATGCATATTCTCCTACAAGCCATGGCAAGAGATATCGTTAAAAGAGAATCAAGCAACAGGACTAATCAGCCAAAGATGTATGACGTGTTCTTGAGCTTCAGAGGGGAAGACAGTCGTGCAAAGTTCATGTCACATCTTTCAAAATGCAGGAATTTATGCTTTTAG 1197 0.391 MTWVEAITKSSQYPTDFVPTNENQYDCIKSVVERVICALYKTRPELSTTFYTLSVKSGVQDVIQLLKQSKYPLVIGIWGKAGIGKTSIATTIYDLIGPYFEGKCMFTNVSGVWGRSNGPVSLQKELLFYVNKTTALENVTLKENLRHKRVLLILEDVDKLEQLNALCGSRNWFGAGSKIIITTRDRRLLKEYRVDHIYRVKELDKSESLEVFKWGALGKETTSPENFDELSREVVAYSGGWPLALIALGRLMHGKEALQWKGVLWSLKNLSIPAPRLLSTLEKSFNELSDNEKQTFLDIASFFIGKNQNDVLQILNRSIQNAALQISLLEDKSLVTIVENNKLEMHILLQAMARDIVKRESSNRTNQPKMYDVFLSFRGEDSRAKFMSHLSKCRNLCF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00855 398 Gene3D - 332 394 IPR035897 -
Vivi5g00855 398 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 362 IPR044974 GO:0006952
Vivi5g00855 398 Coils Coil 312 332 - -
Vivi5g00855 398 PRINTS Disease resistance protein signature 144 158 - -
Vivi5g00855 398 PRINTS Disease resistance protein signature 74 89 - -
Vivi5g00855 398 PRINTS Disease resistance protein signature 238 252 - -
Vivi5g00855 398 SUPERFAMILY Toll/Interleukin receptor TIR domain 361 391 IPR035897 -
Vivi5g00855 398 Gene3D - 202 289 IPR042197 -
Vivi5g00855 398 ProSiteProfiles TIR domain profile. 369 398 IPR000157 GO:0007165
Vivi5g00855 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 299 IPR027417 -
Vivi5g00855 398 Pfam NB-ARC domain 59 269 IPR002182 GO:0043531
Vivi5g00855 398 Gene3D - 38 197 IPR027417 -
Vivi5g00855 398 SUPERFAMILY "Winged helix" DNA-binding domain 280 361 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00855 Vivi-Chr5 16376161 16378442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00855 69 372 WRKY Transcription Factor Family AT5G45050 32.903 1.78e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00855 - - vvo:131601415 792.727