Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00843 ATGGGGGCTCGTTGCTCGAAATTCTCTTTCTGTTGGTTCCACTCTCACCTCAATCCTTCTGTTCTTGATTCCTCGGACCAAGAAAATGGTGGCAAGAGTGAAAAGAACTTGTGGCCAAGTTTTAGTGAGTATAGTTTGGAAGAATTGAAGGCTGCTACAGATGGGTTCTCCTCAGACAACATAGTCTCTGAGCATGGTGAGAAAGCTCCAAATGTTGTTTACAAAGGGAAACTTGAGAATGGACAGTTTATCGCCATCAAACGTTTCAACAAGTTCGCTTGGCCCGATTCTCGCCAGTTCATTGAAGAATCTAAACAAGTGGGGAGCCTTAGAAGTGAACGTTTGGCGAATTTGATTGGTTGTTGCTATGAAGGGGATGAGAGGCTACTAGTGGCAGAGTTTATGCCACATGAAACTCTGGCTAAGCATCTCTTTCATTGGGAAGCACAGCCCATGAAATGGGCAATGAGGTTGAGGGTGGCTTACTATTTAGCTCAAGCTCTTGAATATTGTACGAGTAAGGGAAGGGGTTTGTATCATGATCTCAATGCCTACCGGATCTTGTTTGATCAGGATGGTAATCCCAGGTTATCTTGCTTTGGACTTATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTCACGCCTCCCGAGTACTTAAGGACAGGTAGAGTGACAGTAGAGAGTGTTGTTTACAGTTTTGGAACTTTGCTGCTTGATCTTTTGAGTGGTAAACATATTCCACCAAGCCATGCACTTGACCTAATTCGTGGAAAAAACTATTTGATGTTGATGGATTCTGCATTAGAGGGTCATTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGGCTTCTCGTTGTTTACAATACGAAGCTCGAGAGAGACCAAATGCAAAGTCTCTTGTTGAAACTCTTATGGCTCTTCAAAAAGAAATCGAGGTTCCATCACATGTTCTGATGGGTCTCCAGCATGAAACAGAAACATCAGCAAAACCATTGTCATTGACATCTTTTGGTGAGTCATGCTTGAGATTGGATCTTACTGCCATACATGCAATATTAGAGAAGACTGGTTACAAGGATGACGAAGGAATTGCCAATGAGCTTTCCTTTCAGTTATGGACTAGTCAAATGCAAGAGACCTTGAATTTGAAGAAGCATGGAGATGCTGCTTTTAGAGCTAAGGACTTCGTCACGGCCATTGACTGCTATACACAATTCATAGATGGAGGGACCATGGTGTCACCAACAGTGTATGCAAGGCGCTGCTTGTCATATTTGATGAATGACATGCCACAGGAAGCTCTAGGGGATGCCATGCAGGCTCAAGTGGTATCTCCTGAGTGGCCTACTGCTTTGTATCTTCAAGCAACTTGCCTTTTCAGCCTTGGAATGGAAAATGATGCACAGGAGACTCTCAAGGACGGGACTAACATGGAAGCTAAAAAGCATAAAAACTGA 1476 0.4329 MGARCSKFSFCWFHSHLNPSVLDSSDQENGGKSEKNLWPSFSEYSLEELKAATDGFSSDNIVSEHGEKAPNVVYKGKLENGQFIAIKRFNKFAWPDSRQFIEESKQVGSLRSERLANLIGCCYEGDERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAYYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTVESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNYLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVETLMALQKEIEVPSHVLMGLQHETETSAKPLSLTSFGESCLRLDLTAIHAILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDAAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPEWPTALYLQATCLFSLGMENDAQETLKDGTNMEAKKHKN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00843 491 Gene3D Tetratricopeptide repeat domain 380 491 IPR011990 GO:0005515
Vivi5g00843 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 21 490 IPR045845 GO:0004672|GO:0009742
Vivi5g00843 491 SUPERFAMILY TPR-like 387 480 IPR011990 GO:0005515
Vivi5g00843 491 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Vivi5g00843 491 FunFam probable serine/threonine-protein kinase At4g35230 384 491 - -
Vivi5g00843 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Vivi5g00843 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Vivi5g00843 491 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g00843 491 SUPERFAMILY Protein kinase-like (PK-like) 34 320 IPR011009 -
Vivi5g00843 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Vivi5g00843 491 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00843 Vivi-Chr5 16118854 16122970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00843 18 322 Glycoside Hydrolase AT3G07070 32.641 4.37e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vivi5g00843 PK_Tyr_Ser-Thr 8.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00843 - - gmx:100814477 920.613