Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00830 ATGGCGATTGTAAAGGAAGAAGGTGAACATGAATTGGCTCCTCCACAGCAGAAGAAAGAACCGTCTGAAAATGAGAAGAGGAAGCTGAAAATTGTGCCTGGGAGTTTGATGAAAGCTTTGATCAGACCTGGTGGAGGTGATTCTCGACCTTCAGATGGTGATCAGGTTATCTATCACTGCACGGTTCGAACTTTGGATGGAGTTGTTGTGGAATCTACGCGATCTGAAAATGGAGGCAAGGGCACGCCGATAAGACATGTATTGGGTAAAAGCAAGATGTTATTGGGCTTGCTAGAAGGAATTCCAACAATGTTGAAGAGTGAAGTGGCAATGTTGAAGATGAAACCTCAGCTGCATTATGGTGAGGATGATTGTCCTATTTCTGCTCCTGATGGGTTTCCTAAGGATGATGAACTCCATTTTGAAATAGAGCTGATAGAGTTTTTCAAGGCCAAGGTTGTCACTGAAGATTTGGAAGTGATTAAAAAGGTTGTATGCGAAGGGCAGGGTTGGGAATCTCCAAGAGAACCTTATGAAGTGAAAGCTTGGGTTTCAGCGAAGACAGCTAGTGGGAAATTGATCATGTCACAGAAAGACGGAGAACCATACTTCTTTACATTTGGAAAATCTGAGGTACCTAAAGGTCTTGAAATGGGGATCGGAACAATGGTTCGGGAAGAAAAAGCTGTTATATATGTTACAAGTCAGTATTTAACTGAGTCTCCTCTGATGCCTGTTATAGAAGATTCTGAAGTCCAGTTTGAAGTGGAGCTTGTTCACTTTATTCAAGTGAGGGACGTGCTTGGAGATGGGCGTCTTATAAAACGTCGGGTTCGTGATGGAAAAGGTGACTTTCCAATGGATTGCCCCCTTCATGACAGTCTACTTCATGTTCATTACAAGGGCACTGTTCTCGGTGAAGAAAAGAGGGTGTTCTATGATACGAGAGTTGATAACGATGGTCAACCATTGGATTTCTGCTCTGGAGAAGGGCTTGTACCAGAGGGATTTGAATTGTGTGTTCGTCTGATGCTACCAGGAGAGGTGGCTCTAGTCACATGTCCACCAGACTATGCTTATGATAAGTTTACAAGGCCTTCAAATGTCCCTGAGGGTGCTCATATTCAGTGGGAAATTGAACTTCTATCTTTTGAAATGCCAAAGGACTGGACGGGAATGGACTTTAAAAGTATAATGTACGAAGCTGAAAATATCAGAAACAAGGGTAACAGGTTATTCAAAGAAGGAAAATATGAACTTGCAAAGGCAAAGTATGACAAGGTGCTTCGAGAATTTAATCATGTTAATCCACAAGATGACGATGAAGGAAAAGTTTTTTCAGATACACGTAATTTGCTACACCTGAATGTTGCTGCATGCTATCTAAAGCTGGGAGAATGCAGAAAGTCCATTGAGACTTGTAATAAGGTTTTAGAAGCGAATCCTGCGCACGTCAAGGGTCTTTATCGTCGTGGAATGGCCTACATGGCTAATGGAGATTTTGATGAAGCAAGGGCTGATTTCAAAATGATGATGAAAGTCGATAAGTCAACTGCATCAGACGCATCAGCAGCCCTTATAAAACTTAAGCAGAAAGAGCAGGAAGTTGAGAATAAAGCTCGGAAACAATTTAAAGGGCTATTTGACAAGAAGCCTGGAGAAATTGCAGAAGTTAATGCCAATGAAGATGGAGATCATCAGGTCACCAGGGAAAGCCAGAAAGATGGTGAGGTACGGGAAGACGCATCAGATGGAACAAATTCAGAGGATTCACATGAAGCTGTGCCTGATGTAGACCAAAGGGGTTGGTTCTCTCACTTTTGGCCAACCGGTAGTAGAATTTTTTCGTCTCTTGGGCTTCAAAGATGTACCATACTATAA 1881 0.4232 MAIVKEEGEHELAPPQQKKEPSENEKRKLKIVPGSLMKALIRPGGGDSRPSDGDQVIYHCTVRTLDGVVVESTRSENGGKGTPIRHVLGKSKMLLGLLEGIPTMLKSEVAMLKMKPQLHYGEDDCPISAPDGFPKDDELHFEIELIEFFKAKVVTEDLEVIKKVVCEGQGWESPREPYEVKAWVSAKTASGKLIMSQKDGEPYFFTFGKSEVPKGLEMGIGTMVREEKAVIYVTSQYLTESPLMPVIEDSEVQFEVELVHFIQVRDVLGDGRLIKRRVRDGKGDFPMDCPLHDSLLHVHYKGTVLGEEKRVFYDTRVDNDGQPLDFCSGEGLVPEGFELCVRLMLPGEVALVTCPPDYAYDKFTRPSNVPEGAHIQWEIELLSFEMPKDWTGMDFKSIMYEAENIRNKGNRLFKEGKYELAKAKYDKVLREFNHVNPQDDDEGKVFSDTRNLLHLNVAACYLKLGECRKSIETCNKVLEANPAHVKGLYRRGMAYMANGDFDEARADFKMMMKVDKSTASDASAALIKLKQKEQEVENKARKQFKGLFDKKPGEIAEVNANEDGDHQVTRESQKDGEVREDASDGTNSEDSHEAVPDVDQRGWFSHFWPTGSRIFSSLGLQRCTIL 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00830 626 FunFam Peptidylprolyl isomerase 390 546 - -
Vivi5g00830 626 FunFam Peptidylprolyl isomerase 10 152 - -
Vivi5g00830 626 Gene3D Tetratricopeptide repeat domain 396 550 IPR011990 GO:0005515
Vivi5g00830 626 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Vivi5g00830 626 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 53 149 IPR001179 GO:0003755
Vivi5g00830 626 Coils Coil 519 542 - -
Vivi5g00830 626 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 293 385 IPR001179 GO:0003755
Vivi5g00830 626 Pfam Tetratricopeptide repeat 486 509 IPR019734 GO:0005515
Vivi5g00830 626 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 294 382 IPR001179 GO:0003755
Vivi5g00830 626 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 146 IPR001179 GO:0003755
Vivi5g00830 626 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 174 259 IPR001179 GO:0003755
Vivi5g00830 626 Gene3D - 152 262 IPR046357 GO:0003755
Vivi5g00830 626 PANTHER PEPTIDYLPROLYL ISOMERASE 154 261 - -
Vivi5g00830 626 SUPERFAMILY FKBP-like 27 153 - -
Vivi5g00830 626 SMART tpr_5 485 518 IPR019734 GO:0005515
Vivi5g00830 626 SMART tpr_5 451 484 IPR019734 GO:0005515
Vivi5g00830 626 SMART tpr_5 402 435 IPR019734 GO:0005515
Vivi5g00830 626 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 262 IPR001179 GO:0003755
Vivi5g00830 626 SUPERFAMILY TPR-like 400 539 IPR011990 GO:0005515
Vivi5g00830 626 Gene3D - 3 151 IPR046357 GO:0003755
Vivi5g00830 626 Gene3D - 263 389 IPR046357 GO:0003755
Vivi5g00830 626 FunFam Peptidylprolyl isomerase 263 387 - -
Vivi5g00830 626 SUPERFAMILY FKBP-like 154 261 - -
Vivi5g00830 626 MobiDBLite consensus disorder prediction 1 28 - -
Vivi5g00830 626 MobiDBLite consensus disorder prediction 559 596 - -
Vivi5g00830 626 FunFam Peptidylprolyl isomerase 153 262 - -
Vivi5g00830 626 SUPERFAMILY FKBP-like 260 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00830 Vivi-Chr5 15972753 15985040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00830 29 550 Calmodulin-binding Proteins AT5G48570 29.831 5.85e-62 214