Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00808 ATGGCCAGTGATGAGGGTTTTGAAGGTTACCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTTGTTGTGGCTCAAAACCAACAACCTCATGAGCCTTTACTTCCTTTCTACGATTCATCTTTCATATCTAGTTTCTCTAACCAACATGTTTTGAAACCAAATTCATGTTCTTCTTCTAATAATTCTATGAAAGATTTAGAATGTTCCAATTTCATGATGAGGTTTTCAAGAGAAGAAGGTAAGAGGGTTATGAATAGTCATAGTCATAATAACAATATTTCTCCTTCTCCTTCTTCTTCTAATCATCCTTACTATGAAAGTTTGAATCATAGTAGCAACCCTTTTCTCTACCAAGCACAAAACATTCAGAATCTCAGAAACTTTGATGAAGTGCAAAACAGTAGTAGTACTAGTACTATGATGTTGAACCATGAGCCTTTGTCTTTGTCACTTTCATCTAACAAAAGTGTTGGTGGTAATAATAATAATAGTAATAGTAATTTACCTTTGGAGTTGAATCTTCAGAGATATGGATCTGTGATTTATGGTGGTGGAGGTGTGATTCAAGGGCTGGTTGATGGTGGTGGTGGAGGAAGTGGCGGTTCAGTTCCTTTTACTGGCTATGCTTCTGTTTTGAAGGATTCTAGGTTTTTGAAACCTGCTCAAGAATTGTTGGAAGAGATGTGTGATGTTGGAGGAAGAAATGTTTGTGGTGAGAAGGTTATGGTCATGGCTGATTCTTCTTTGATGATGGAGTCTCCTTTGGAAAGATTGAGTGAAGAAGAAGATCCATTTGGTGATGGTAGAAATAAATCAAGACTCTTAACTATGCTTGATGAGGTATACAAGAGGTATAGACAATACTACCAACAGATGCAATCGGTAGTAACATCGTTCGAATACGTTTCGGGTCTCAACAACGCGGCTCCGTATGCAAGTTTGGCGATAAAAGCCATGTCAAAACATTTTAGATGCTTGAAGAAGGCAATAACTGATCAACTTCAATCAAATAATAAGGCTCATTTTCACTCGAGCAACAGGAGGGACGAATCTCCGAGATTTGGAAATAACGAAAGAGGAGGTCCTTACGGCCACAGGTCAGGTTATCTCGAGCAGCAACAACAGCCTGTTTGGCGACCTCAACGAGGACTCCCTGAACGCGCTGTCACCGTTCTTAGAGCTTGGCTGTTTGAACACTTTCTGCATCCATACCCTACCGATACAGATAAGATAATGTTAGCTAAACAAACCGGTCTATCTCGTAGTCAGGTGTCAAATTGGTTCATAAATGCGAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACACATGCTAGAAACAAGACAAGGAGCCCCAAAAGATTCTCAACAAAAGGAAGAAAATTCTCGAAACAAATCAAATGATCAACACCATTTGACTTCAGATACTTCTCTACATTCGGAGAATCCGTCTAGCTCAACTAGTAAGTTTCCCGACTCATCATCTTACAAGCGCGTGGTAAACGAAATTCCAAACATACCAACTAGGACTCAAGGACAACAACATCAACAACAACCACAACAACAAATGAATCTACCCTTTCAACAAGTAGGTGTTGGAGTGAACATGGGAAGTGGAAGCAGCAACAACAATAATAATAGTAATAGTAATGTGTCATTGACACTAGGACTTTATCAAAACCATGGAATTGGTTTAGCTGAACCCTTTCCATTAAGTGCTGCTCAACGTTTTGGTCTTGGTCTTGAAACCAATAATGAAGGTAATTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGAGGGCAAATGTTTCATGATTTTGTAGGATGA 1845 0.3908 MASDEGFEGYHVPQQSRRDKLRVVVAQNQQPHEPLLPFYDSSFISSFSNQHVLKPNSCSSSNNSMKDLECSNFMMRFSREEGKRVMNSHSHNNNISPSPSSSNHPYYESLNHSSNPFLYQAQNIQNLRNFDEVQNSSSTSTMMLNHEPLSLSLSSNKSVGGNNNNSNSNLPLELNLQRYGSVIYGGGGVIQGLVDGGGGGSGGSVPFTGYASVLKDSRFLKPAQELLEEMCDVGGRNVCGEKVMVMADSSLMMESPLERLSEEEDPFGDGRNKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQLQSNNKAHFHSSNRRDESPRFGNNERGGPYGHRSGYLEQQQQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQGAPKDSQQKEENSRNKSNDQHHLTSDTSLHSENPSSSTSKFPDSSSYKRVVNEIPNIPTRTQGQQHQQQPQQQMNLPFQQVGVGVNMGSGSSNNNNNSNSNVSLTLGLYQNHGIGLAEPFPLSAAQRFGLGLETNNEGNYVMSGFESQNRHFGGQMFHDFVG 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00808 614 MobiDBLite consensus disorder prediction 479 500 - -
Vivi5g00808 614 MobiDBLite consensus disorder prediction 449 478 - -
Vivi5g00808 614 SMART prehox3 208 334 IPR006563 -
Vivi5g00808 614 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Vivi5g00808 614 MobiDBLite consensus disorder prediction 338 370 - -
Vivi5g00808 614 Pfam Associated with HOX 213 333 IPR006563 -
Vivi5g00808 614 MobiDBLite consensus disorder prediction 87 109 - -
Vivi5g00808 614 FunFam BEL1-like homeodomain protein 9 383 445 - -
Vivi5g00808 614 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 104 466 - -
Vivi5g00808 614 SMART HOX_1 380 444 IPR001356 GO:0003677
Vivi5g00808 614 MobiDBLite consensus disorder prediction 449 500 - -
Vivi5g00808 614 SUPERFAMILY Homeodomain-like 382 447 IPR009057 -
Vivi5g00808 614 MobiDBLite consensus disorder prediction 88 109 - -
Vivi5g00808 614 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Vivi5g00808 614 Gene3D - 383 445 - -
Vivi5g00808 614 CDD homeodomain 380 441 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00808 Vivi-Chr5 15475380 15479206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00808 137 614 Homeobox Transcription Factor Family AT5G02030 45.652 7.50e-104 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi5g00808 POX 4.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00808 - - cam:101498314 763.837