Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00805 ATGGAACCGGAGCCACCTACCGTTACGGCGGTGCACGACGGAAGCGGCGACGACGGCGTAGTTGCATTAGGAGAAGGTTCTGTCAGCAACGAGAACAGCAACAGGGATAGAGTGAAGGGACCTTGGTCTCCTGAAGAAGATGCCATTCTCAGTGGTCTGGTGAGTAAGTTTGGTGCTAGGAATTGGAGTTTGATTGCTCGTGGGATCTCTGGGAGATCCGGGAAGTCGTGCCGACTGAGGTGGTGTAATCAGCTTGATCCTGCTGTTAAGCGGAAGCCGTTTACTGATGAGGAAGACCGGATCATAGTTGCTGCTCATGCGGTCCATGGAAACAAATGGGCAGCCATTGCCAGGATTCTACCAGGAAGAACAGACAACGCCATTAAGAACCACTGGAATTCTACTTTGAGGCGCCGAGGAGTTGAACATGATAAGTTCAAGTTAGAATCAGGTAACATGGGGGAAGATATTAGCATGGAGAAAGCCAGAGCATCATCAGAAGAAACGCTATCATGTGGAGATCTTAATTCATTGAAATCTTCTGAAGGAAGAGATTTTAGTTCTAAGGAGATTGTGGATGATAGATATGAAGACAAAGCCAGGACTGATCCGCAATTACACCATGAAGCCAGGGATCTGCCAATTGTTGAAGTCAGGGATCCGCCGACCCTTTTTAAGCCTGTAGCTCGTGTAAGTGCTTTTAACGTATATCATGCTTTTAATGGTTCACAGCCGTCAACATCAGTTCCAAGACCTGTTCCAATGCAAGGACCTATTTTACATTCACCACAATCAGATATGGAAATTTGTAAAATGCTCAACGGAACTTATGGCGACAGGTCAATACCTCAGCAATGTGGTCATGGATGCTGTTCTTCTCTAAATGGTAACACCTCAAAAAGCTCTTTGTTAGGCCCGGAATTCGTTGAATATTCGGAGCCTCAATCTTTCCCAAGTTTTGAGCTGGCTGCAATAGCTACAGATATTAGTAATCTTGCTTGGCTTAAAAGTGGATTGGAGAATAATAGTGTCAAAATGATGGGTGAAACTGCTGGCAGGGTTAATATCTAA 1071 0.4538 MEPEPPTVTAVHDGSGDDGVVALGEGSVSNENSNRDRVKGPWSPEEDAILSGLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHAVHGNKWAAIARILPGRTDNAIKNHWNSTLRRRGVEHDKFKLESGNMGEDISMEKARASSEETLSCGDLNSLKSSEGRDFSSKEIVDDRYEDKARTDPQLHHEARDLPIVEVRDPPTLFKPVARVSAFNVYHAFNGSQPSTSVPRPVPMQGPILHSPQSDMEICKMLNGTYGDRSIPQQCGHGCCSSLNGNTSKSSLLGPEFVEYSEPQSFPSFELAAIATDISNLAWLKSGLENNSVKMMGETAGRVNI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00805 356 MobiDBLite consensus disorder prediction 1 42 - -
Vivi5g00805 356 SUPERFAMILY Homeodomain-like 36 132 IPR009057 -
Vivi5g00805 356 FunFam Transcription factor MYB44 93 139 - -
Vivi5g00805 356 ProSiteProfiles Myb-like domain profile. 34 85 IPR001005 -
Vivi5g00805 356 MobiDBLite consensus disorder prediction 183 208 - -
Vivi5g00805 356 PANTHER MYB PROTEIN-RELATED 39 182 - -
Vivi5g00805 356 FunFam MYB transcription factor 39 90 - -
Vivi5g00805 356 Gene3D - 38 90 - -
Vivi5g00805 356 Pfam Myb-like DNA-binding domain 42 99 - -
Vivi5g00805 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 85 IPR017930 -
Vivi5g00805 356 MobiDBLite consensus disorder prediction 181 208 - -
Vivi5g00805 356 Gene3D - 93 139 - -
Vivi5g00805 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Vivi5g00805 356 CDD SANT 41 83 IPR001005 -
Vivi5g00805 356 SMART sant 38 87 IPR001005 -
Vivi5g00805 356 SMART sant 90 138 IPR001005 -
Vivi5g00805 356 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Vivi5g00805 356 CDD SANT 93 136 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00805 Vivi-Chr5 15374534 15379640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00805 35 354 MYB Transcription Factor Family AT3G09230 49.697 4.93e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g00805 Myb_DNA-bind_6 7.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00805 K09422 - gmx:100813406 530.406