Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00778 ATGTCTCATTCTGAAGCCGTGCTGCTACTGCAACTATTCAGATATGCAAATCAGACTTCTAAATCAACGAACTCAGGTGTTACCTACGATGCATTAGGGTTTCTTAAGGCAGTCAGAGTTGCATTACAAAACCAGATGGAAAAGTATGATCAATTTATAAATGTCCTAAGAGATTTCAGTTCTAAAAGAATTTACATAAGTCAGGTCAAAGCAAAATTGAAGACCTTGTTTAAAAGGCATAAATATTTAATTTTGGAATTCAACTCCTTCATGCCCAAGAAACATCGAATCACACTTTCACTTGAAGAATCAGATGCATCACGTTTTGTGCAGGCACTAAAACATGCCATTCAATATAAGAGAGAAAATAATTATGATGATTTTGTCAAAGTTATGAAGGATTACCGGAATCAAACTATTGATTTAAGCTGTGTCTCTGCAAAAGTGAAGGTCATGCTCAAAAATCATTCCGATTTAATTTTAGAATTCAACACCTTCATGCCATCTAAATATCGTATCAAGACCACCGGAAAAAAAGAAGATAATGGTGAATTATGTCAACTTCCTTGGGATGTACTTGATGTCATTTGCAAAACACTAGATTTTGACGACCTCTTTTCATTTTCTGGTGTTTGCAAGAATTGGAGGACTTTTCATAAATCATATTTCTTGTCATCCCAAGAACCATTGCTTGTTCGTATGAATGGTTATCATAGTGAATCGTATTCCTTTATTAGCATACCCAATAAGAAAGAATATGATTTGAAAATGGTGAGTTGCTTCCAGCTCCCCAAATGTATCTATGTTAGAGTTTCCAGCGGATATTTCATCTTCGCCCATGAAAATAATTCATTTTTGCTATTCAATCCATTTACGAGGAAAAAATTGGTAATTGATGCAACATTTAGAGTTAATCATATGATATTTTATCGGTATGAAGCTTTGCTTGCTTTTGAGAAATGCTCTGAGGAATTTGTGTTGGTGGTTTTATGCCTAGAGTCTAGCCGTTTGTATGTCTATCAATCTCGACACAATGGTTGGTTTACTTATTCAACATTAAGACCAGAGGAGGTGGTAGTCGACTTTGTGGTTTCGAATAATATAATATATGTTGTCACAAACAATGCCAGCATAGGGATATTAAACTTGAATTCTAGAAATATTAAATTTCTAAACCTCAAGAATACTCCGGATAAACTTCTCAACAGAGGACCCTCAGAAATGTCGTTTAAGTTGGTTAATTGTGATGAGCAACTTTTAGTGATTGATTTTCGATCCTGGCACTCGAGAAGGGATGTTTACAAGATAGACTTGTCAACCATGAATTATGTTAAAATGGAAACTTTGGGTGACATTGCGTTATTTTATGTTTCTTTTAGAAACTGTCGGGCATTGAGCAACCCCATGAGATTTGGATATCGGAGCAATTACGTGTATGAAGTAAATTGTTTTTCCCAATGTGCTATGTATGATTGGAATGATTATAGATTAAACTGTTATGATTGTTCAGTTGGAGAATTGGATTTCTTTGATTGGTGTTTTAGAGATTTAATAGGCCAAGGTTCTGTTAGAGACTTCAATTTATTTGATTGGTGTTTTAGGCATTTAAACTATCAAGTTGATTATTCTTTAGTTGAATAA 1641 0.3425 MSHSEAVLLLQLFRYANQTSKSTNSGVTYDALGFLKAVRVALQNQMEKYDQFINVLRDFSSKRIYISQVKAKLKTLFKRHKYLILEFNSFMPKKHRITLSLEESDASRFVQALKHAIQYKRENNYDDFVKVMKDYRNQTIDLSCVSAKVKVMLKNHSDLILEFNTFMPSKYRIKTTGKKEDNGELCQLPWDVLDVICKTLDFDDLFSFSGVCKNWRTFHKSYFLSSQEPLLVRMNGYHSESYSFISIPNKKEYDLKMVSCFQLPKCIYVRVSSGYFIFAHENNSFLLFNPFTRKKLVIDATFRVNHMIFYRYEALLAFEKCSEEFVLVVLCLESSRLYVYQSRHNGWFTYSTLRPEEVVVDFVVSNNIIYVVTNNASIGILNLNSRNIKFLNLKNTPDKLLNRGPSEMSFKLVNCDEQLLVIDFRSWHSRRDVYKIDLSTMNYVKMETLGDIALFYVSFRNCRALSNPMRFGYRSNYVYEVNCFSQCAMYDWNDYRLNCYDCSVGELDFFDWCFRDLIGQGSVRDFNLFDWCFRHLNYQVDYSLVE 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00778 546 CDD F-box_SF 187 216 - -
Vivi5g00778 546 ProSiteProfiles PAH domain profile. 23 94 IPR003822 GO:0006355
Vivi5g00778 546 SUPERFAMILY Tricorn protease domain 2 270 449 - -
Vivi5g00778 546 Gene3D Paired amphipathic helix 105 168 IPR036600 GO:0006355
Vivi5g00778 546 Gene3D Paired amphipathic helix 30 92 IPR036600 GO:0006355
Vivi5g00778 546 SUPERFAMILY F-box domain 182 221 IPR036047 GO:0005515
Vivi5g00778 546 ProSiteProfiles F-box domain profile. 182 234 IPR001810 GO:0005515
Vivi5g00778 546 SUPERFAMILY PAH2 domain 100 168 IPR036600 GO:0006355
Vivi5g00778 546 ProSiteProfiles PAH domain profile. 97 170 IPR003822 GO:0006355
Vivi5g00778 546 SMART fbox_2 188 227 IPR001810 GO:0005515
Vivi5g00778 546 Pfam F-box domain 186 217 IPR001810 GO:0005515
Vivi5g00778 546 PANTHER OS09G0392200 PROTEIN 151 515 IPR044619 -
Vivi5g00778 546 Pfam Paired amphipathic helix repeat 125 166 IPR003822 GO:0006355
Vivi5g00778 546 Pfam Paired amphipathic helix repeat 47 90 IPR003822 GO:0006355
Vivi5g00778 546 SUPERFAMILY PAH2 domain 28 93 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00778 Vivi-Chr5 14740956 14742954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00778 104 196 WRKY Transcription Factor Family AT4G12020 34.409 5.68e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi5g00778 PAH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00778 - - vvo:131606327 1119.38