Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00700 ATGTCAAGGGCTGCCATACTTATCAAGGATTTGGTGAAAGGCAATCAAGTCTGGAAGATGCAAATAAGGGTTGTTGATTTGTGGGTTATTAAGGAGAAAACAGGGCAACAACACCTTGAGTGTGTCATTCAGGATGTAAAGGGTGATCAGATTCACGTAATCACGAGAAGCCGAGACTTCAAAGAGTGGATTGATCAAGTCAAAGAAAATGAAACATATTCTCTTTACAATGGAGAGCCGGTTGTTAATGATGGACCCTTCAAAGTTTGTGCAAACCCACTCAAACTTCTATTCAATGGAGGGACTACCGTGACAAATGTGGCGTTTCCCGAAATACCGCTTCACAAATACAACTTTCAACCTATCGAAAACTTTCTCAAAGGAAGCATCAAGCATGATATGTTATACGATGTCATAGGTGTTTTACAGGATGTGCTTCGGACGCAAGTGGGAGGAGGTGGTAGGAAGTCCTGCGCTAATATCACTTTGCGTGATATCGAAGGAAATGTTATAGAGGTTGTCTTATGGGGTGATTACTGCAAGCAATTCTTGAGCTACAATACCCCTGGAAAAATGGCTGGCCCTACTATTATCATCTTGACACATGCGTGGTGCAAGCCAAACACAGTTTCTGGTGTACCAATGCTCTCTAATGCATGGAACGGTTCACGACTTCACATAAACTTGGAACATCCACAAGTGGAAGAATTCAGAGCTAGCTTTGGAGAAAATGAATTATCCAATGCTCCTGATTTTTCCCTGTCCTTAACCTTTGATTCATCCCTTCAATCCTCTAACAACAATTGGAAGAGCCTCGACGAGGTCAAAAGCATCCGTGATATCGCTGCGTTAGGAAAGAAGGAAAAGGAGAGCTAA 876 0.4235 MSRAAILIKDLVKGNQVWKMQIRVVDLWVIKEKTGQQHLECVIQDVKGDQIHVITRSRDFKEWIDQVKENETYSLYNGEPVVNDGPFKVCANPLKLLFNGGTTVTNVAFPEIPLHKYNFQPIENFLKGSIKHDMLYDVIGVLQDVLRTQVGGGGRKSCANITLRDIEGNVIEVVLWGDYCKQFLSYNTPGKMAGPTIIILTHAWCKPNTVSGVPMLSNAWNGSRLHINLEHPQVEEFRASFGENELSNAPDFSLSLTFDSSLQSSNNNWKSLDEVKSIRDIAALGKKEKES 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00700 291 Gene3D - 5 108 IPR012340 -
Vivi5g00700 291 Gene3D - 111 249 IPR012340 -
Vivi5g00700 291 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Vivi5g00700 291 SUPERFAMILY Nucleic acid-binding proteins 7 105 IPR012340 -
Vivi5g00700 291 SUPERFAMILY Nucleic acid-binding proteins 117 244 IPR012340 -
Vivi5g00700 291 CDD RPA1_DBD_B_like 137 241 - -
Vivi5g00700 291 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00700 Vivi-Chr5 13245603 13248508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00700 18 180 Core DNA Replication Machinery Family AT4G19130 21.512 7.08e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00700 - - vvo:131604240 592.423