Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00653 ATGAGTTCTCTTCACCATCAACATGATCATGATCGTGATTACGAAGCATGTTTGATAGAGAATGTAGAGAACACAAAGGCAACAACATTGAGCAAGGAAAGTATGAAACATGGTAGAACAGCACATAACATATCATCATCTTCATTCCGTAGGAAATCTAATGTCACTCTTGTCTCTAATCCTCGTTATGGAAATGTTTTGGCTAATTTTCAAGAGGTTATTCTTGGAACAAAGCTTTCTATTCTGTTTGTAGCGATTCCTTTTGCCATTTTTGCTCAATGCTATGGATTTTCAAAACCTTTGGTTTTTGCTTTGAGCTTACTTGGCCTTATCCCTCTTGCAGAAAGAGTCAGCTTCTTGACAGAAGAGATAGCTTATTACACAGGTCCTACAGTGGGAGGACTTTTGAATGCAACTTGTGGGAATGCTACAGAGCTCATCATTGCAATATTTGCACTTAGCAATAACAAAATTGATGTGGTCAAGTATTCTCTACTTGGTTCAATCCTCTCCAACCTTCTTCTTGTTCTTGGAACCTCTCTATTATGTGGCGGCATTGCAAATATTCGAGCCGAGCAAAAATTCGACAGAAGACAGGCAGATATGAACTTGCTTATGCTTCTTCTGGCATTGTTGTGTCACTTACTGCCCTTATTGTTCCAATATGGTGGGGCTTCGGTTGCTATCGATGCAGATTCATCTCTGCAGTTCTCAAGATTTGCGAGCATTTTGATGGTGATTGCATATTTGGTATATCTTATCTTCCAACTATGGACGCATCGGCAATTATTTGAAGCTCGAGATGAAGAGGATGAAGAGAATGAAAATGCTTCAAAAGCAGTTATTGGATTTTGGAGTGGATTTGCTTGGCTTGTTTTTATGACGGTGTTTATTGCGATTTTGTCCGAATATGTGGTTGACACTATTGAGGATGCATCGGATTCATGGGGTCTATCTATCAGCTTCCTCTCCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACACGCAGGAGCTATCATATTTGCTTTCAAGAATAAGCTGGACATCTCTTTGGGTGTTGCTTTGGGTTCTGCAACTCAAATTGGAATGTTTGTGGTTCCCTTGTGTGTAATTGTTGCTTGGATTCTTGGCATCAAAATGGACCTTAACTTCAACCTTCTAGAAACAGGTTCTCTTGCTTTGGCAATTATAACAACAGGTTTCACATTACAGGATGGAACTTCTCACTACTTGAAAGGCCTTATTCTCTTGCTCTTGTATATTGTTATCGGGGCATGCTTTTTCGTACAAAGAACACCCTCTGGCTTTGGAGCATTTTCGTCTTTTGGAGGTGAAGAGTAG 1347 0.3994 MSSLHHQHDHDRDYEACLIENVENTKATTLSKESMKHGRTAHNISSSSFRRKSNVTLVSNPRYGNVLANFQEVILGTKLSILFVAIPFAIFAQCYGFSKPLVFALSLLGLIPLAERVSFLTEEIAYYTGPTVGGLLNATCGNATELIIAIFALSNNKIDVVKYSLLGSILSNLLLVLGTSLLCGGIANIRAEQKFDRRQADMNLLMLLLALLCHLLPLLFQYGGASVAIDADSSLQFSRFASILMVIAYLVYLIFQLWTHRQLFEARDEEDEENENASKAVIGFWSGFAWLVFMTVFIAILSEYVVDTIEDASDSWGLSISFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIGMFVVPLCVIVAWILGIKMDLNFNLLETGSLALAIITTGFTLQDGTSHYLKGLILLLLYIVIGACFFVQRTPSGFGAFSSFGGEE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00653 448 FunFam Vacuolar cation/proton exchanger 274 431 - -
Vivi5g00653 448 NCBIfam calcium/proton exchanger 66 430 - -
Vivi5g00653 448 Gene3D - 281 430 IPR044880 -
Vivi5g00653 448 Gene3D - 130 280 IPR044880 -
Vivi5g00653 448 Pfam Sodium/calcium exchanger protein 101 258 IPR004837 GO:0016020|GO:0055085
Vivi5g00653 448 Pfam Sodium/calcium exchanger protein 287 425 IPR004837 GO:0016020|GO:0055085
Vivi5g00653 448 FunFam Vacuolar cation/proton exchanger 130 273 - -
Vivi5g00653 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 32 434 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vivi5g00653 448 NCBIfam calcium/proton exchanger 82 430 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00653 Vivi-Chr5 12348328 12353422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00653 20 435 Antiporters AT2G38170 67.925 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00653 K07300 - gmx:100782052 576.63