Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00611 ATGGGTGTTGATTACTATAAAGTCCTTCAGATAGATCGTAATGCCAAAGAGGATGATCTCAAGAAGGCTTATCGCAAACTTGCTATGAAATGGCATCCTGATAAGAACCCTAACAACAAAAAAGATGCTGAAGCCAAATTCAAGCAAATCTCTGAAGCTTATGATGTTTTGAGTGATCCTCAAAAGAGAGCTGTGTATGATCAGTATGGTGAGGAGGGGTTGAAGGGGCAGATGCCTCCTCCTGGTGCAGGTGGATTTTCAGAAGCCAGCGATGGTGGACCGACGACGTTCCGGTTCAATCCGAGAAGTCCTGATGACATATTTTCAGAGTTTTTCGGGTTTGCAAAACCGTTCGGTGGAATGGGTGATATGGGTGGTATGGGTAGTATGGGTGGTCATCCCGGTACATCCGGCTTTCCGAGGGGAATGTTTAGGGATGACATTTTCTCCTCATTAAGGAATGCAACAACTGGTGAAGGATCTGGCAATGTGCCGAGAAAAAGTGCACCGATAGAGAGAACACTGCCTTGCGGTTTGGAGGATTTGTATAAAGGAACCACCAAAAAAATGAAGATTTCTAGAGATGTTTCTGATTCTAGTGGGAGGCCTACTACAGTAGAGGAAATTCTAACCATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCCGAAAAGGGAAATGAACAAAAAGGACTTATCCCCGCGGACCTTGTTTTCATCATCGACGAGAAGCCTCATAGTGTCTTCAAAAGGGATGGCAACGATCTTGTTGTCACTCAGAAGATCACTCTTGTAGAAGCTCTGACAGGTTACACAGCGCAAATAACAACCCTTGACGGAAGGAATCTCACAGTCCCCGTCAACACGATTATCAGTCCATCGTACGAAGAAGTTGTTAAAGGAGAAGGTATGCCGATTCCTAAAGAACCTTCCAAAAGGGGAAACTTGAGAATCAAGTTCAACGTAAAGTTTCCGTCTAGACTTACATCAGAACAGAAGACCGGCATCAAGCGATTATTGACATAA 1038 0.4393 MGVDYYKVLQIDRNAKEDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQMPPPGAGGFSEASDGGPTTFRFNPRSPDDIFSEFFGFAKPFGGMGDMGGMGSMGGHPGTSGFPRGMFRDDIFSSLRNATTGEGSGNVPRKSAPIERTLPCGLEDLYKGTTKKMKISRDVSDSSGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQKGLIPADLVFIIDEKPHSVFKRDGNDLVVTQKITLVEALTGYTAQITTLDGRNLTVPVNTIISPSYEEVVKGEGMPIPKEPSKRGNLRIKFNVKFPSRLTSEQKTGIKRLLT 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00611 345 Pfam DnaJ C terminal domain 171 329 IPR002939 -
Vivi5g00611 345 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vivi5g00611 345 MobiDBLite consensus disorder prediction 72 100 - -
Vivi5g00611 345 CDD DnaJ 4 59 IPR001623 -
Vivi5g00611 345 Gene3D - 170 248 - -
Vivi5g00611 345 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vivi5g00611 345 Gene3D - 250 330 - -
Vivi5g00611 345 FunFam DnaJ subfamily B member 13 250 330 - -
Vivi5g00611 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 171 250 IPR008971 GO:0006457|GO:0051082
Vivi5g00611 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 338 IPR008971 GO:0006457|GO:0051082
Vivi5g00611 345 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 344 - -
Vivi5g00611 345 Pfam DnaJ domain 4 67 IPR001623 -
Vivi5g00611 345 FunFam DnaJ subfamily B member 13 3 122 - -
Vivi5g00611 345 FunFam Dnaj homolog subfamily b member 167 248 - -
Vivi5g00611 345 CDD DnaJ_C 169 332 - -
Vivi5g00611 345 Gene3D DnaJ domain 3 122 IPR036869 -
Vivi5g00611 345 SMART dnaj_3 3 62 IPR001623 -
Vivi5g00611 345 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vivi5g00611 345 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vivi5g00611 345 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vivi5g00611 345 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vivi5g00611 345 SUPERFAMILY Chaperone J-domain 3 95 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00611 Vivi-Chr5 11140917 11144070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00611 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 1.25e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00611 K09510 - csin:114278081 586.26