Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00603 ATGAGAGAGATGCGTAAGTCATTCAAGGATTCTCTCAAAGCTCTTGAAGCTGATATTCAATTTGCCAATACTATAGCTTCTGATTATCCAAGAGGAAATGACAGAGTCTGCTTTCAAATGAGATTGTCTTATAGCCCAGCTGCTCAGTTTCTTCTTTTTCTGGTTCAGTGGACTGATTGCCATCTTGCCGGATTCTTAGGATTGCTTCGAATTCTCATCTACGAGGCATATGATGAAGGGAAGAAAACCACCATTTATGAAAGAAAAGCTAGTCTAAAGGAGTTCTATGGTGTGATCTTTCCGTCGTTATTACAACTCAAGGGAGGAATCACTGAGGTAGAAGAGAGGAAACAAAAAGATTTATGCGCTAGAAAGTACAAACCGAAAGATGTGATTAGAAAAGGAAAGCTATCTGCAATTGATATAGAGAGAGAAGAAGAATGTCCTATTTGTATGGAGATGAACACCAAAGTTGTGTTGCCAAATTGCAACCATTCTTTGTGTATGAAATGCTATAATGACTGGTACACAAGATCTCGATCTTGCCCTTTCTGTCGGGACAATCTTATGAGACTAAACTCTGGCGAGCTTTGGATCTACTTGAGCAGCAGAGAGATAATTGATTTGGAATCAATCAATAAGGAGAATCTGAAAAGGCTATTTATGTACATTGATAAGTTGCCTCTGATTTTGCCAGATCAAATATTCATGTCTTATCCTCGAAGCTTTTGA 732 0.3839 MREMRKSFKDSLKALEADIQFANTIASDYPRGNDRVCFQMRLSYSPAAQFLLFLVQWTDCHLAGFLGLLRILIYEAYDEGKKTTIYERKASLKEFYGVIFPSLLQLKGGITEVEERKQKDLCARKYKPKDVIRKGKLSAIDIEREEECPICMEMNTKVVLPNCNHSLCMKCYNDWYTRSRSCPFCRDNLMRLNSGELWIYLSSREIIDLESINKENLKRLFMYIDKLPLILPDQIFMSYPRSF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00603 243 Pfam Zinc finger, C3HC4 type (RING finger) 145 188 - -
Vivi5g00603 243 SUPERFAMILY RING/U-box 138 191 - -
Vivi5g00603 243 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Vivi5g00603 243 FunFam RING/U-box superfamily protein 129 195 - -
Vivi5g00603 243 SMART ring_2 148 185 IPR001841 -
Vivi5g00603 243 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Vivi5g00603 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 194 IPR013083 -
Vivi5g00603 243 PANTHER RING FINGER PROTEIN 41, 151 6 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00603 Vivi-Chr5 11045458 11052132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00603 92 186 C3H Transcription Factor Family AT5G01960 31.000 1.42e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00603 K25840 - qsa:O6P43_016613 380.948