Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00598 ATGGCAACAGCCACCGCCGCTGCCACTTCCTCCTTCATCGGAACTCGTTTCCGTGAAGTCCAATCCAGTACCTTCCGAGTACAAGCCAAATTCGGCGGATTCGGATTTGGGAAGAAGAAAGCCGCACCGAAGAAACCGTCACGCTCGGCTCCAACCACCGATCGTCCGTTATGGTTCCCCGGAGCAAAGTCGCCGGAGTATCTAGACGGAAGCTTTGTCGGCGATTACGGTTTCGATCCATTTGGTTTGGGGAAGCCAGCTGAGTATTTGCAATTTGACCTTGATTCGCTTGATCAGAATCTGGCGAAGAATCTCGCCGGAGATGTGATCGGAACTAGGACGGAGTTTGAGGATGTTAAGTCGACGCCGTTTCAGCCTTATACTGAGGTTTTTGGACTTCAGAGGTTTAGAGAATGTGAGTTGATTCATGGTAGGTGGGCCATGCTTGCTACTCTTGGTGCTCTTACTGTTGAATGGCTTACCGGAGTTACATGGCAAGACGCCGGAAAGGTGGAGCTAGTGGAAGGATCAACATATCTTGGACAACCACTTCCATTCTCAATCACAACATTGATTTGGATAGAAGTTCTAGTTATCGGATACATCGAATTCCAGAGGAACGCCGAGCTTGACTCCGAAAAGAGACTATACCCTGGCGGAAAATTCTTCGACCCACTTGGTTTAGCAGCTGATCCAGAGAAGAAAGCAACACTTCAATTGGCTGAAATCAAACATGCTCGTCTTGCTATGGTTGCTTTCCTTGGTTTTGCTGTGCAAGCTGCTGCTACTGGTAAAGGACCTCTTAACAATTGGGCTACACATTTGAGTGATCCTCTTCACACTACCATCATTGATACCTTTTCTTCCTCTTAG 873 0.48 MATATAAATSSFIGTRFREVQSSTFRVQAKFGGFGFGKKKAAPKKPSRSAPTTDRPLWFPGAKSPEYLDGSFVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFEDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00598 290 Pfam Chlorophyll A-B binding protein 65 260 IPR022796 -
Vivi5g00598 290 Gene3D Chlorophyll a/b binding protein domain 58 290 - -
Vivi5g00598 290 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 11 286 IPR001344 GO:0009765|GO:0016020
Vivi5g00598 290 FunFam Chlorophyll a-b binding protein, chloroplastic 102 289 - -
Vivi5g00598 290 SUPERFAMILY Chlorophyll a-b binding protein 49 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00598 Vivi-Chr5 10961075 10963224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00598 12 290 Chloroplast and Mitochondria Gene Families AT3G08940 85.000 3.55e-174 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00598 K08915 - gmx:100785180 496.508