Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00564 ATGCACCTATTAGGGGAGAAGAGGGAGAAACTTCAAAGCACTGTTGATCTTGTTCAAAATAACTTGAACTTAGAGGTGATCTATGGGGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATAGCTAAGAAAGTTATTCAAGAGGCTCTGGTCAATGTCTGTGGTGCCGTAGTCTGCAAGGAAGAATGCGATCCATTTGTATCTGTGACTCTTGTGAGGCAGGGTGCTAAACATAATGAAGTGAGAAAGACAATTAGCTTGACCTCTGAGAGTAGTGAACTTCTGTTTTCTGATGTTATTCCTGGAAAATACAGGCTTGAGGTGAAACATAGTTCCCCTGAATCAGTGGCCAAGGAAGATAATTGGTGCTGGGAGAAGAGCTTCATAGATGTAAATATTGGAGCTGAGGACTTGGAAGGAATTGTTTTTGTTCAAAAAGGTTACTGGGTCAATGTGATCTTCACTCATGAAGTTAGGGGGGGTTACATAACTCAACCTGATGGATCAACTGTGAATTTAAAGATTCAGATTGGAGACGAAGAAGATTGTGATGAAGATATGGAAGAAGCTTGTGATCATGAAGATGTGAAAGAAGGTTGTCCTGAAGATGTGGAAGAAGAACAAGGAGATGATCAAGAAGAATTTTAA 672 0.3958 MHLLGEKREKLQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKATSIAKKVIQEALVNVCGAVVCKEECDPFVSVTLVRQGAKHNEVRKTISLTSESSELLFSDVIPGKYRLEVKHSSPESVAKEDNWCWEKSFIDVNIGAEDLEGIVFVQKGYWVNVIFTHEVRGGYITQPDGSTVNLKIQIGDEEDCDEDMEEACDHEDVKEGCPEDVEEEQGDDQEEF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00564 223 Gene3D Palm domain of DNA polymerase 2 71 IPR023211 -
Vivi5g00564 223 SUPERFAMILY DNA/RNA polymerases 8 57 IPR043502 -
Vivi5g00564 223 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 45 183 - -
Vivi5g00564 223 MobiDBLite consensus disorder prediction 190 223 - -
Vivi5g00564 223 Pfam DNA polymerase family B 17 55 IPR006134 GO:0000166|GO:0003677
Vivi5g00564 223 MobiDBLite consensus disorder prediction 207 223 - -
Vivi5g00564 223 ProSitePatterns DNA polymerase family B signature. 28 36 IPR017964 GO:0000166|GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00564 Vivi-Chr5 9568921 9572802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00564 8 90 Core DNA Replication Machinery Family AT5G67100 53.571 5.24e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00564 K26500 - vvo:131601310 361.303