Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00543 ATGATAGTTGCTATGGATTTGAATGCGTCTCCGGTACCGGAGGAGGAAGATGAAGATGTTTATGAAGAGAAGATACATCATGTTCAAGAGTATAGTGCACCTGAGGACCATGTAGAAAGTGGAGCTGCTATAGCACGCCGGGAGCGTGAGGAAAGAAAGAGACGCTTGAAAAGGGAACGTCCAGATGATAGACCTGTGAATCGATCACAATCACCTCGATATGATCAACAATTTCATACAAAAAACCCTAAATCATATGATACAAGTAGGCTTCCTCCAGGTTGGTTAGATTGCCCTGCATCTGGCCAGGAAATTTGTTGTATGATACCTTCTAAAGTCCCTCTTGGTGAATCTTTCAATGACTGCATTTTTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGGAAACTTGGTCTGGTGATTGATTTGACAAACACCTCTCGATACTACCCAGTGACAGATTTAAAAAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAGGGGGCGTGGTTCTGTACCTGATAATTTATCCGTGAATCAGTTTGTCTATGAGGTTATACAATTTTTGTCACGCCAAAAGCAGTCAAAGAAGTATATACTTGTTCACTGTACACACGGGCATAACCGTACCGGATACATGATTATCCACTATCTAATGCGTGCTATGTCAATGTCTGTTACACAGGCAATTAAAATTTTTTCTGAAGCGCGCCCTCCAGGAATCTATAAACCTGATTATATTGATGCATTGTACACATTTTATCATGAAAAAAAACCCGAGATGGTAGTTTGTCCTCCTACTCCAGAATGGAAAAGGTCTTCTGAACTTGATCTCAATGGTGAAGCAGTTCCAGACGATGATGATGATGGAGTACCAGGCCCTGATTTGCAGGAGAACATTGAGACTGGCACTCAGATGACGAATGATGATGTTTTAGGAGATGAGATACCCAGTGATCAGCAAGATGCATTTCGACAGTTCTGTTATCAAACACTTAGATTGGGTGTTGGGGCCAGAGGACATACACAGTTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGATAATTTGCAGTTATTACGACAGCGTTATTATTATGCAACATGGAAAGCTGATGGTACACGGTATATGATGTTAATAACAATGGATGGGTGTTACTTGATTGATAGAAGTTTTAATTGTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGAGTTTGAATGATGGTTTGGGTGAGAAGACCCACCATTTCACATTACTTGACGGTGAAATGGTTATTGATACTTTGCCAGATTCAAATAAGCAGGAGAGAAGATACCTTATATATGATCTTATGGCAATCAACCATGTTTCAATAATAGAGCGACCCTTCTGTGAAAGATGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATCATGAACGACAACATATATACCAGAGCAGAAATCCTTACTATAGATATGATCTGGAACCATTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTTTCTACTGTCACAAAGCTTTTAAAGGAATTCATCAAAAGACTTTCACATGAGGCAGATGGTCTCATATTTCAGGGTTGGGATGATCCTTATGTACCACGTACTCATGAAGGACTCTTAAAGTGGAAATACGCTAATTTAAATTCAGTTGACTTTCTGTTTGAGGTCGAAGGTGAGCGGGAGCTACTTTTTGTGAATGAGCGAGGAAAGAAGAAACTCATGGATGGGAATAAGGTTGCTTTCCCAGATGGTTCGGAGCCCTCACTTTATTCGGGAAAGATAATCGAGTGTACTTGGGATTTTGATAACCTGGAATGGATATTCTTGCGAATTAGGACAGATAAATCAACTCCAAATGAGTTTAATACTTACAGAAAGGTGATGCGAAGCATAAAAGACAACATCACAGAAGAAGACTTGTTGAATGAAATAAATGAGATAATTCGCCTTCCCATGTATGCGGACAGGATCAAAACTGATAGTAAAGCAAATCAGCATCAGCATGGTAATGCTGCAAAGCGAAGGTGA 2064 0.4016 MIVAMDLNASPVPEEEDEDVYEEKIHHVQEYSAPEDHVESGAAIARREREERKRRLKRERPDDRPVNRSQSPRYDQQFHTKNPKSYDTSRLPPGWLDCPASGQEICCMIPSKVPLGESFNDCIFPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVTDLKKEGIKHVKIQCRGRGSVPDNLSVNQFVYEVIQFLSRQKQSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSELDLNGEAVPDDDDDGVPGPDLQENIETGTQMTNDDVLGDEIPSDQQDAFRQFCYQTLRLGVGARGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNCRRVQMRFPCRSLNDGLGEKTHHFTLLDGEMVIDTLPDSNKQERRYLIYDLMAINHVSIIERPFCERWKMLEKEVIEPRNHERQHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYVPRTHEGLLKWKYANLNSVDFLFEVEGERELLFVNERGKKKLMDGNKVAFPDGSEPSLYSGKIIECTWDFDNLEWIFLRIRTDKSTPNEFNTYRKVMRSIKDNITEEDLLNEINEIIRLPMYADRIKTDSKANQHQHGNAAKRR 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00543 687 Pfam Dual specificity phosphatase, catalytic domain 143 263 IPR000340 GO:0008138|GO:0016311
Vivi5g00543 687 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 318 556 - -
Vivi5g00543 687 CDD Adenylation_mRNA_capping 345 556 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi5g00543 687 Gene3D DNA ligase/mRNA capping enzyme 316 555 - -
Vivi5g00543 687 FunFam mRNA-capping enzyme 577 670 - -
Vivi5g00543 687 Pfam mRNA capping enzyme, C-terminal domain 560 653 IPR013846 -
Vivi5g00543 687 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 280 IPR029021 -
Vivi5g00543 687 CDD RNA_5'-triphosphatase 94 260 - -
Vivi5g00543 687 FunFam mRNA capping enzyme family protein 87 301 - -
Vivi5g00543 687 SUPERFAMILY Nucleic acid-binding proteins 558 670 IPR012340 -
Vivi5g00543 687 MobiDBLite consensus disorder prediction 70 87 - -
Vivi5g00543 687 Gene3D Protein tyrosine phosphatase superfamily 66 286 IPR029021 -
Vivi5g00543 687 PIRSF mRNA_capping_HCE 77 687 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vivi5g00543 687 Gene3D - 595 662 IPR012340 -
Vivi5g00543 687 ProSiteProfiles Dual specificity protein phosphatase domain profile. 113 269 IPR020422 GO:0006470|GO:0008138
Vivi5g00543 687 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 188 257 IPR000387 GO:0016311|GO:0016791
Vivi5g00543 687 MobiDBLite consensus disorder prediction 20 69 - -
Vivi5g00543 687 MobiDBLite consensus disorder prediction 1 90 - -
Vivi5g00543 687 FunFam mRNA capping enzyme, putative 316 553 - -
Vivi5g00543 687 PANTHER MRNA-CAPPING ENZYME 86 667 - -
Vivi5g00543 687 SMART dsp_5 125 265 IPR020422 GO:0006470|GO:0008138
Vivi5g00543 687 ProSiteProfiles ATP-dependent DNA ligase family profile. 448 611 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi5g00543 687 Pfam mRNA capping enzyme, catalytic domain 357 555 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi5g00543 687 ProSitePatterns Tyrosine specific protein phosphatases active site. 210 220 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00543 Vivi-Chr5 8913314 8923436 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00543 1 675 Protein tyrosine phosphatase (PTP) family AT3G09100 68.282 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00543 K13917 - gmx:100776633 1222.99