Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00542 ATGGATTTGAATGCGTCTCCGGTACCGGAGGAGGAAGATGAAGATGTTTATGAAGAGAAGATACATCATGTTCAAGAGTATAGTGCACCTGAGGACCATGTAGAAAGTGGAGCTGCTATAGCACGCCGGGAGCGTGAGGAAAGAAAGAGACGCTTGAAAAGGGAACGTCCAGATGATAGACCTGTGAATCGATCACAATCACCTCGATATGATCAACAATTTCATACAAAAAACCCTAAATCATATGATACAAGTAGGCTTCCTCCAGGTTGGTTAGATTGCCCTGCATCTGGCCAGGAAATTTGTTGTATGATACCTTCTAAAGTCCCTCTTGGTGAATCTTTCAATGACTGCATTTTTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGGAAACTTGGTCTGGTGATTGATTTGACAAACACCTCTCGATACTACCCAGTGACAGATTTAAAAAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAGGGGGCGTGGTTCTGTACCTGATAATTTATCCGTGAATCAGTTTGTCTATGAGGTTATACAATTTTTGTCACGCCAAAAGCAGTCAAAGAAGTATATACTTGTTCACTGTACACACGGGCATAACCGTACCGGATACATGATTATCCACTATCTAATGCGTGCTATGTCAATGTCTGTTACACAGGCAATTAAAATTTTTTCTGAAGCGCGCCCTCCAGGAATCTATAAACCTGATTATATTGATGCATTGTACACATTTTATCATGAAAAAAAACCCGAGATGGTAGTTTGTCCTCCTACTCCAGAATGGAAAAGGTCTTCTGAACTTGATCTCAATGGTGAAGCAGTTCCAGACGATGATGATGATGGAGTACCAGGCCCTGATTTGCAGGAGAACATTGAGACTGGCACTCAGATGACGAATGATGATGTTTTAGGAGATGAGATACCCAGTGATCAGCAAGATGCATTTCGACAGTTCTGTTATCAAACACTTAGATTGGGTGTTGGGGCCAGAGGACATACACAGTTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGATAATTTGCAGTTATTACGACAGCGTTATTATTATGCAACATGGAAAGCTGATGGTACACGGTATATGATGTTAATAACAATGGATGGGTGTTACTTGATTGATAGAAGTTTTAATTGTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGAGTTTGAATGATGGTTTGGGTGAGAAGACCCACCATTTCACATTACTTGACGGTGAAATGGTTATTGATACTTTGCCAGATTCAAATAAGCAGGAGAGAAGATACCTTATATATGATCTTATGGCAATCAACCATGTTTCAATAATAGAGCGACCCTTCTGTGAAAGATGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATCATGAACGACAACATATATACCAGAGCAGAAATCCTTACTATAGATATGATCTGGAACCATTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTTTCTACTGTCACAAAGCTTTTAAAGGAATTCATCAAAAGACTTTCACATGAGGCAGATGGTCTCATATTTCAGGGTTGGGATGATCCTTATGTACCACGTACTCATGAAGGACTCTTAAAGTGGAAATACGCTAATTTAAATTCAGTTGACTTTCTGTTTGAGGTCGAAGGTGAGCGGGAGCTACTTTTTGTGAATGAGCGAGGAAAGAAGAAACTCATGGATGGGAATAAGGTTGCTTTCCCAGATGGTTCGGAGCCCTCACTTTATTCGGGAAAGATAATCGAGTGTACTTGGGATTTTGATAACCTGGAATGGATATTCTTGCGAATTAGGACAGATAAATCAACTCCAAATGAGTTTAATACTTACAGAAAGGTGATGCGAAGCATAAAAGACAACATCACAGAAGAAGACTTGTTGAATGAAATAAATGAGATAATTCGCCTTCCCATGTATGCGGACAGGATCAAAACTGATAGTAAAGCAAATCAGCATCAGCATGGTAATGCTGCAAAGCGAAGGTGA 2052 0.402 MDLNASPVPEEEDEDVYEEKIHHVQEYSAPEDHVESGAAIARREREERKRRLKRERPDDRPVNRSQSPRYDQQFHTKNPKSYDTSRLPPGWLDCPASGQEICCMIPSKVPLGESFNDCIFPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVTDLKKEGIKHVKIQCRGRGSVPDNLSVNQFVYEVIQFLSRQKQSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSELDLNGEAVPDDDDDGVPGPDLQENIETGTQMTNDDVLGDEIPSDQQDAFRQFCYQTLRLGVGARGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNCRRVQMRFPCRSLNDGLGEKTHHFTLLDGEMVIDTLPDSNKQERRYLIYDLMAINHVSIIERPFCERWKMLEKEVIEPRNHERQHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYVPRTHEGLLKWKYANLNSVDFLFEVEGERELLFVNERGKKKLMDGNKVAFPDGSEPSLYSGKIIECTWDFDNLEWIFLRIRTDKSTPNEFNTYRKVMRSIKDNITEEDLLNEINEIIRLPMYADRIKTDSKANQHQHGNAAKRR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00542 683 PANTHER MRNA-CAPPING ENZYME 82 663 - -
Vivi5g00542 683 MobiDBLite consensus disorder prediction 1 15 - -
Vivi5g00542 683 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 265 IPR020422 GO:0006470|GO:0008138
Vivi5g00542 683 FunFam mRNA-capping enzyme 573 666 - -
Vivi5g00542 683 MobiDBLite consensus disorder prediction 66 83 - -
Vivi5g00542 683 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Vivi5g00542 683 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Vivi5g00542 683 ProSiteProfiles ATP-dependent DNA ligase family profile. 444 607 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi5g00542 683 MobiDBLite consensus disorder prediction 16 65 - -
Vivi5g00542 683 Gene3D DNA ligase/mRNA capping enzyme 312 551 - -
Vivi5g00542 683 FunFam mRNA capping enzyme, putative 312 549 - -
Vivi5g00542 683 Pfam mRNA capping enzyme, catalytic domain 353 551 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi5g00542 683 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 276 IPR029021 -
Vivi5g00542 683 SUPERFAMILY Nucleic acid-binding proteins 554 666 IPR012340 -
Vivi5g00542 683 Pfam mRNA capping enzyme, C-terminal domain 556 649 IPR013846 -
Vivi5g00542 683 MobiDBLite consensus disorder prediction 1 86 - -
Vivi5g00542 683 Gene3D - 591 658 IPR012340 -
Vivi5g00542 683 Pfam Dual specificity phosphatase, catalytic domain 139 259 IPR000340 GO:0008138|GO:0016311
Vivi5g00542 683 CDD Adenylation_mRNA_capping 341 552 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi5g00542 683 PIRSF mRNA_capping_HCE 73 683 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vivi5g00542 683 Gene3D Protein tyrosine phosphatase superfamily 62 282 IPR029021 -
Vivi5g00542 683 SMART dsp_5 121 261 IPR020422 GO:0006470|GO:0008138
Vivi5g00542 683 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 314 552 - -
Vivi5g00542 683 FunFam mRNA capping enzyme family protein 83 297 - -
Vivi5g00542 683 CDD RNA_5'-triphosphatase 90 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00542 Vivi-Chr5 8913314 8923437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00542 1 671 Protein tyrosine phosphatase (PTP) family AT3G09100 68.538 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00542 K13917 - gmx:100776633 1217.6