Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00538 ATGGATTTTCCTAGAATGCATCTACCAGATATGTCATTATTTCTTGAATCCAGAAGAAGAAAATACGACGTGTTCTTGAGTTTCAGAGGCAAAGATACTCGTGCATCCTTCACTTCACATCTCTATGCTTCTCTTCAAAACGCCGGATTCATCGTCTTCATGGACGATCAATCGCTTCAAAGAGGAAAATTCATCTCGACATCGTTACTGCGAGGAATTAAAGATTCTAGTATTGCCGTCGTTGTATTTTCCAAAAACTATGCAGGTTCCCAATGGTGTATGCGAGAGCTGGTGGAAATTATGGAGTATCGATGTGAGGCGGTACTGCCTGTATTCTACCATGTAGATCCCTCGGAAGTTCGGAATCAAACTGGTGAAGTTGGAAAAGTGTTTCGAAATCTTTTGAACAATCATGACGAAAATGAGTATGAGGCTATAGACTGGAAAAATGCTCTTGTTAAGTTAGGTCGCATTGCAGGGTTTGTAGTCTCGAATTACAGGAACGAAGGTGAGGATATCAAGGACATTGTTGAAAAAGTTACACATTTACTTGACAAGACAGACTTGTTTGTTGCTGATCATCCAGTGGGAGTCGAATCTCGAGTGCTAGATATGATTCAACTACTAGACACCCCATTTTCAAATGATGTTCTGCTATTAGGGATGTGGGGTATGGGAGGCATTGGTAAAATCACTATTGCAAAATCCATTTACAATAAAGTTGGCCGCAATTTTGAAGCTAGGTGCTTCCTTGCAAATATTAGGGAAGTTTGGGAGCAAGATTTTGGACCAATGTATTTACAAGAGCGTATTTTGTATGATATCTTCAAAGAAACTACAACCAAGATACAAAATATTGAATCAGGAAAATCTGCATTAAGGGAAAGACTATGTCATAAAAGAATACTTCTTGTACTTGACGACGTGAGTAAATTGGACCAACTCAAAGCTTTGTGTGGAAGTCGTAAATGGTTTGGTTCAGGGAGTAGAATAATCGTCACAACTAGAGATAAGCAAATAATTAGAGGGAATCGAGTTAACCAAGTATACATAATGAAAGAAATGGATGAAAGTGAGTCAATTGAGCTTTTTAGTTGGCATGCATTCAAGAAAGTGAGTCCTAGAGAAAATTTTGCTGAAATTTCCAAAAATGTTGTCAAATATTGTGGGGGATTGCCATTAGCCCTGGAAGTCCTTGGGTCCTATTTGTTTGATAGAGGGGTCACAGAGTGGGAGTGTGTATTGGAGAAACTCAAGAGAATTCCCAATGATCAAGTACAAAAGAAGTTGAAAATAAGCTACAATGGTTTAAATGATGATACCGAGAGGGATATATTCCTTGACATAGCTTTTTTCTTTATTGGGATGGACAAAAATGATGTTATGCATATATTAAATGGTTGTGGACTTTTTGCAGAAATTGGAATAAGTGTTCTTGTTGAGCGAAGCCTTGTAAGAGTGGATGGTAAAAACAAACTTGAAATGCATGATTTGATACGAGATATGGGAAGAGAAATCATTCGTGAGATATCACCGAAGAAACTTGAGAAGCGTAGCAGGTTATGGTTTCACGAGGATGTTGTGGATGTATTGTCAGAACAAACTGGAACTCAAGCCATTGAGGGGCTAGTTTTGAAGTTGACACCTAATGCAAAATGTTTTAGTACCAAAGCATTTGAGAACATGAAGAATCTTAGATTGCTTCAACTTGCTGGTGTACAACTTGATGGAGATTTTCAATATCTTTCAAGAAACTTGAGATGGTTGTGTTGGAACGGATTTCCTTTTACATGCATACCTAGAAATTTTTATCAGAGAAACTTAGTTTCCATTGAGTTAGAAAATAGCAATATCAAATTTTTGAAGAAAGAGATGCATGGGTTGGAGAATCTAAAAATTCTCAATCTTAGTCATTCTCACTATCTGACAGAGACTCCGGACTTTTCCAACATGCCTAATCTTGAAAAGCTAATACTCAAAGATTGTCCAAGGTTGCCTGAGGTTTCCGATACCATTGGACATCTTCACAAAGTACTTCTGATAAATTTGAAAGACTGTATTAGCCTTTCTAACCTTCCAAGAACCATCTATACGTTGAAATCGCTAAAAACTCTTATTCTTTCTGGGTGTTTAATGATTGACAAATTGGAAGAGGATTTGGAACAAATGGAATCTTTATCCACTCTGATTGCACATAACACCGCAATAACAAAAGTGCCGTTTTCAATAGCCAGGTCAAAAAACATTGGATATATTTCTCTGTGTGGCTATAAAGGATACTCACGCGAAGTAATTCCTTCTATCATTCAGTCTTGGATGTCACCAACAAATAACCTCTCATCCTTAGTTCAAACACCTGCTAGCATGTCATCTCTTGTTTCTTTAGATGCGTCAAGAAGTAGTTCCCGCAGTCTATCATCTATTTCTGATGTCCTTACAAAGGTTCTAAGTCTTTTGGTAGAGTGCGGCTCAGAACTTCAACTTTCACGAGATGCAATTTTAGATGCTTTAAGTGCAACTAATTCTAAGGAATCGGAATCATCTGCAACTACATCACAAGTATCAGCGGTGAAGACTTCTACATTAATTGAATATTGTGGTCAAGTGCACATTTCTACAACAAAAAAATCCATGAAGTCTCTTCTAATTCGAATGGGAACGAATTGCCAAACTGCCAATATTCTGAAAGAAAGCATCTTACAGAATATGGCTGTCAATGCGTGTGGTGGTTGCTTGCTCCCTGGTGATAGTTATCCAGATTGGTTAACTTTCAATTCCGAAGGTTCTTCTGTAATTTTTATAGTACCGCAAGTGAAAGGGCATAACTTGAAGACAATGATGTGCTTTGTCTATTCATCAAGCTCAGATAACATAACATCGGATGGCCTTAAAAATGTGTTGGTGATAAATCACATGAAGACCACCATTCAGCTCTATAAGAGAGACGCGTTTGCCTCCTTTGAAAATGAGGAGTGGCAGAGAGTGGTATCAAATATGGAACCTGGTGACAAAGTGGAGATTGTTGTTGTTTTTGACAACGGTTTCATTGTGACGAAGACAGCAATTTATCTCATATATGACAAATCAATAGGCAAACAAATGGAGCAATGTTGTGCACTAGATAAGGATGTTCTTGTTGGTAGTGGTGATGAAAATGAATGCGCTGCCAAGACGGTTTCTCTTCTAGTAGAGCCTACAGATGATTTTAAACAAAAACAGAAAAGAAGAAAACTTGATTGA 3240 0.3781 MDFPRMHLPDMSLFLESRRRKYDVFLSFRGKDTRASFTSHLYASLQNAGFIVFMDDQSLQRGKFISTSLLRGIKDSSIAVVVFSKNYAGSQWCMRELVEIMEYRCEAVLPVFYHVDPSEVRNQTGEVGKVFRNLLNNHDENEYEAIDWKNALVKLGRIAGFVVSNYRNEGEDIKDIVEKVTHLLDKTDLFVADHPVGVESRVLDMIQLLDTPFSNDVLLLGMWGMGGIGKITIAKSIYNKVGRNFEARCFLANIREVWEQDFGPMYLQERILYDIFKETTTKIQNIESGKSALRERLCHKRILLVLDDVSKLDQLKALCGSRKWFGSGSRIIVTTRDKQIIRGNRVNQVYIMKEMDESESIELFSWHAFKKVSPRENFAEISKNVVKYCGGLPLALEVLGSYLFDRGVTEWECVLEKLKRIPNDQVQKKLKISYNGLNDDTERDIFLDIAFFFIGMDKNDVMHILNGCGLFAEIGISVLVERSLVRVDGKNKLEMHDLIRDMGREIIREISPKKLEKRSRLWFHEDVVDVLSEQTGTQAIEGLVLKLTPNAKCFSTKAFENMKNLRLLQLAGVQLDGDFQYLSRNLRWLCWNGFPFTCIPRNFYQRNLVSIELENSNIKFLKKEMHGLENLKILNLSHSHYLTETPDFSNMPNLEKLILKDCPRLPEVSDTIGHLHKVLLINLKDCISLSNLPRTIYTLKSLKTLILSGCLMIDKLEEDLEQMESLSTLIAHNTAITKVPFSIARSKNIGYISLCGYKGYSREVIPSIIQSWMSPTNNLSSLVQTPASMSSLVSLDASRSSSRSLSSISDVLTKVLSLLVECGSELQLSRDAILDALSATNSKESESSATTSQVSAVKTSTLIEYCGQVHISTTKKSMKSLLIRMGTNCQTANILKESILQNMAVNACGGCLLPGDSYPDWLTFNSEGSSVIFIVPQVKGHNLKTMMCFVYSSSSDNITSDGLKNVLVINHMKTTIQLYKRDAFASFENEEWQRVVSNMEPGDKVEIVVVFDNGFIVTKTAIYLIYDKSIGKQMEQCCALDKDVLVGSGDENECAAKTVSLLVEPTDDFKQKQKRRKLD 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00538 1079 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 818 IPR044974 GO:0006952
Vivi5g00538 1079 Gene3D - 191 351 IPR027417 -
Vivi5g00538 1079 SMART till_3 21 158 IPR000157 GO:0007165
Vivi5g00538 1079 Pfam NB-ARC domain 205 435 IPR002182 GO:0043531
Vivi5g00538 1079 ProSiteProfiles TIR domain profile. 20 184 IPR000157 GO:0007165
Vivi5g00538 1079 Gene3D - 354 438 IPR042197 -
Vivi5g00538 1079 Gene3D Ribonuclease Inhibitor 532 844 IPR032675 -
Vivi5g00538 1079 Gene3D - 19 190 IPR035897 -
Vivi5g00538 1079 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 160 IPR035897 -
Vivi5g00538 1079 Pfam TIR domain 21 182 IPR000157 GO:0007165
Vivi5g00538 1079 SUPERFAMILY L domain-like 495 815 - -
Vivi5g00538 1079 PRINTS Disease resistance protein signature 626 642 - -
Vivi5g00538 1079 PRINTS Disease resistance protein signature 389 403 - -
Vivi5g00538 1079 PRINTS Disease resistance protein signature 219 234 - -
Vivi5g00538 1079 PRINTS Disease resistance protein signature 296 310 - -
Vivi5g00538 1079 Coils Coil 611 631 - -
Vivi5g00538 1079 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 186 - -
Vivi5g00538 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00538 Vivi-Chr5 8880475 8885063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00538 17 819 WRKY Transcription Factor Family AT4G12020 31.010 3.06e-80 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00538 - - lja:Lj0g3v0331109.1 1390.94