Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00536 ATGAGCCGAAATTTTTCCCCCATTAAGGATGTCAACGATTCAAAAGAAACATGGAGATTGGTCGTTCGAGTTGTTGATTTTTGGAGTGTTATCAACAACAAGGGTAAGGAGCATCTGGAGATGGTTATAATGGACGTATCGGGTGATAGGATACAAGTTTTGATTCGTTCTGACAACACACCAAAATGGAAAGCACGAATACGCGAAAACATGTCTTGCATAATCAACAATGGAACTGTTTATGATAACGATTTTCAGTGGAAGCTTTGTGATCACGACAAGAAGTTTGTGTTTATTGGTGGTACAACTGTCAAGGAAGTTGATATTCAGAACCTTCCTCCCAAAAGATTTTTTTTCAAAGACTTTACTGATATTCTTGGAGGCAATTGTGAGATGAACCGACTTGAAGATATCATTGGTGTGGTTCAGGAAATCAACAATTTTCAATACAACAATTCTGGAAAAAAGTCATTTGTTTCATTGAGTCTTAAAGACTTGAAAGGTGTCATTGTTAACTGCACATTATGGGAGAGTTACGGAACAAAAATTTTGGACTTCTACCACGACGAAAAAACAGTGGTTACCGTCAAATGA 594 0.3721 MSRNFSPIKDVNDSKETWRLVVRVVDFWSVINNKGKEHLEMVIMDVSGDRIQVLIRSDNTPKWKARIRENMSCIINNGTVYDNDFQWKLCDHDKKFVFIGGTTVKEVDIQNLPPKRFFFKDFTDILGGNCEMNRLEDIIGVVQEINNFQYNNSGKKSFVSLSLKDLKGVIVNCTLWESYGTKILDFYHDEKTVVTVK 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00536 197 Gene3D - 2 107 IPR012340 -
Vivi5g00536 197 SUPERFAMILY Nucleic acid-binding proteins 118 196 IPR012340 -
Vivi5g00536 197 Pfam Domain of unknown function DUF223 40 126 IPR003871 -
Vivi5g00536 197 Gene3D - 110 197 IPR012340 -
Vivi5g00536 197 SUPERFAMILY Nucleic acid-binding proteins 4 107 IPR012340 -
Vivi5g00536 197 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00536 Vivi-Chr5 8868714 8869852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00536 6 179 Core DNA Replication Machinery Family AT5G45400 24.725 2.00e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00536 - - vvo:131624378 352.058