LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g00528	ATGTCTTCCTCTGAAAATTTCTGGAACGTTGATTGGGATGCTGATCTTGATGGTATGAAATTCTCCAACTATACCACTCGTCATTGGGATGATGATCGTGAATATAATTCTAACATATTCAGAAATCACGACGTGTTCTTGAGTTTCAGAGGCGAAGACACTCGTGCATCATTCACTTCGCATCTCTCTGCGTCTCTTCAAAATGCCGGAATTAACGTTTTCAAGGACGATCAATTGATTCAAAGAGGAGATCGCATCTCATCCGCACTACTTCGAGGGATTTACGGTTCTAGAGTTTCTGTTATTGTGTTCTCGGAAAACTACGCTGGTTCGCGATGGTGTCTTCAAGAGTTGGTTAGAATAATGGAGTGCAAGAGAAATGTTGATCAGGTGGTAGTGCCTGTGTTCTACGGTGTAGATCCGTCGGAAGTTCGCCGTCAAACCGGTGAGTTTGGAAAGAGTACTTTTGAATTGGACGAATACATGAAGCAAAGTTGGAGAAATGCGCTTCGTGAGGCCGGTGGCATTGCAGGATTTGTTGTCCAAAATTATAGGAATGAAAATGAGGTTATCAAGGAGATTGTTAAAAATGTTACACACATACTTGACATACCAGACTTGTTCGTTGTTGATAATCCGGTTGGAGTTGAATCTCGAGTGCAAGATATGATCCAACTTTTAGAAACTCAACAATCAAATGATGTTAAACTACTAGGGATATGGGGGATGGGTGGAATCGGTAAAACCACCATTGCAAAAGCCATTTACAATAAAATTGGCCGTGATTTTGAAGGTAGGAGCTTTCTTGCAAATATTAGGGAGGTTTGGGAGCAAGTTCGTGGACAAATATCTTTACAGGAACAACTTATGTACGATATTTTCAAAGAAACAACGAAGATACAAAACATTGGATCAGGACAATCTATACTAAAGAGAAGATTATGTGGAAAAAGAGTATTACTGGTACTTGATGATGTGAATGAACTAGACCAAGTATATGCTTTGTGTGGAAGTTGTAAATGGTTTGCTCCAGGGAGTAGAATAATCATCACAACCAGAGATAAACATATACTTAGAGGGGATAGAGTTAACAAAATATACACAATGAAAGAAATGGATGAAAGTGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAAACGAGTCCCAAAGAAGATTTTTATGAAATTTCCAAATATGTAGTTAAGTATTCTGGGGGGTTGCCGCTAGCTCTGGAAGTCCTTGGGTCTTATTTGTTTGATAGAGAAGTATCTGAGTGGATTTGGGTATTGGAGAAACTCAAAAGAATTCCCAATGATCAAGTACATAAAAAGTTAAAAATAAGCTATGATGGTTTAAATGATCATACAGAGAAAGAAATATTCCTTGGCATCGCCTGCTTCTTTATTGGGATGGATCGAAATGATGTTATACATATATTAAATGGTTGTGAATTTTTCGCAAAAATTGGTGTACGCATTCTTGTCGAGCGAAGCCTTGTAACTGTTGATGATAAGAACAAACTTGGCATGCATGATTTACTGCGGGATATGGCAAGAGAAATCATTCGTAAGAAATCACCAAAGAGGCCTGAGAAGCGTAGTAGGTTGTGGTTTCATGAGGATGTGCTTTATGTTTTGTCAAAACATAATGGAAGAAAAGCTGTTGAGGGACTGGCTTTGAAGCTGCCAGGTCATAGTACAAAACGTTTTAGTACCAAAGCATTTAAAGACATGGAAGAACTCAGATTGCTTCAACTTTCTGGTGCACAACTTGATGGAGATTTTAAATATCTTTCAAGAAATTTGAGATGGTTGCGCTGGAATGTATTTCCTTTATCATGCATACCTTCGAATTTCTACCAAGGAAATTTAGTTTCCATTGAGTTAGAAAACAGCAATATCAAACTTGTGTGGAAAGAGATGCAGAGGATGGAGAAGCTGAAAATTCTCAATCTTAGTCATTCACATTATCTGACTCAGACCCCCGACTTTTCAAACTTACCTAATCTTGAAAAACTAATACTCAAAGATTGTCCAAGGGTGTCTGAGGTTTCTCATAGCATTGGACATCTCAAGAAAGTTCTTCTGATAAATTTGAAAGACTGTATTCGTCTTTGTAACCTTCCAAGAAACATCTATACGTTGAAATCTCTGAAAACTCTCATTCTATCTGGATGTTTAAAGATTAACAAGTTGGAAGAGGACTTGGAACAAATGGAATCTCTAACCGCTCTGATTGCAGATAACACTACTATAACAAAAGTGCCCTTTTCCGTTGTAAGGTCAAAAAACATTGGATATATTTCTTTGTGTGGATACAAAGGATTCTCCCGCGACGTGTTTCCTTCTATCATTTGGTCTTGGATGTCACCGACAAATAATCTCTCACCCAATGCCATGTCATCCCTTGTTTCAATAAATGCATCAAATAGTATTTCCAACAATCTATCATCTATTTCCAGAGTCCTTCCTAAGCTTCAAAGTCTTTGGCTGGAGTGTGAATCGGATCTTCAACTATCACAAGATGCAGCAATAATTTTGAATGCTTTAAGTGCAACAAGTTCTAAGGAATTGGAATCAACTGCAACTACATCACAAGTACTAGATGTAAAGACTTTTTCATTAATTGAATGTCGCAGTCAAGTGCAAGTTTCAACAACAAAAACTTCCATGAAATCTCTTTTAATTCAAATGGGAATGAGTTGCATAATCACCAATCTTCTAAAGAAGAGGATCTTACAGGTTTCACTCTCTTGTATGCACTTATTTATTAAATAA	2784	0.3754	MSSSENFWNVDWDADLDGMKFSNYTTRHWDDDREYNSNIFRNHDVFLSFRGEDTRASFTSHLSASLQNAGINVFKDDQLIQRGDRISSALLRGIYGSRVSVIVFSENYAGSRWCLQELVRIMECKRNVDQVVVPVFYGVDPSEVRRQTGEFGKSTFELDEYMKQSWRNALREAGGIAGFVVQNYRNENEVIKEIVKNVTHILDIPDLFVVDNPVGVESRVQDMIQLLETQQSNDVKLLGIWGMGGIGKTTIAKAIYNKIGRDFEGRSFLANIREVWEQVRGQISLQEQLMYDIFKETTKIQNIGSGQSILKRRLCGKRVLLVLDDVNELDQVYALCGSCKWFAPGSRIIITTRDKHILRGDRVNKIYTMKEMDESESLELFSWHAFKQTSPKEDFYEISKYVVKYSGGLPLALEVLGSYLFDREVSEWIWVLEKLKRIPNDQVHKKLKISYDGLNDHTEKEIFLGIACFFIGMDRNDVIHILNGCEFFAKIGVRILVERSLVTVDDKNKLGMHDLLRDMAREIIRKKSPKRPEKRSRLWFHEDVLYVLSKHNGRKAVEGLALKLPGHSTKRFSTKAFKDMEELRLLQLSGAQLDGDFKYLSRNLRWLRWNVFPLSCIPSNFYQGNLVSIELENSNIKLVWKEMQRMEKLKILNLSHSHYLTQTPDFSNLPNLEKLILKDCPRVSEVSHSIGHLKKVLLINLKDCIRLCNLPRNIYTLKSLKTLILSGCLKINKLEEDLEQMESLTALIADNTTITKVPFSVVRSKNIGYISLCGYKGFSRDVFPSIIWSWMSPTNNLSPNAMSSLVSINASNSISNNLSSISRVLPKLQSLWLECESDLQLSQDAAIILNALSATSSKELESTATTSQVLDVKTFSLIECRSQVQVSTTKTSMKSLLIQMGMSCIITNLLKKRILQVSLSCMHLFIK	927

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g00528	927	SUPERFAMILY	"Winged helix" DNA-binding domain	442	548	IPR036390	-
	Vivi5g00528	927	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	206	464	IPR027417	-
	Vivi5g00528	927	FunFam	Disease resistance protein (TIR-NBS-LRR class)	40	204	-	-
	Vivi5g00528	927	Gene3D	-	371	455	IPR042197	-
	Vivi5g00528	927	Pfam	NB-ARC domain	217	451	IPR002182	GO:0043531
	Vivi5g00528	927	Gene3D	Ribonuclease Inhibitor	554	896	IPR032675	-
	Vivi5g00528	927	Coils	Coil	731	751	-	-
	Vivi5g00528	927	PRINTS	Disease resistance protein signature	406	420	-	-
	Vivi5g00528	927	PRINTS	Disease resistance protein signature	237	252	-	-
	Vivi5g00528	927	PRINTS	Disease resistance protein signature	313	327	-	-
	Vivi5g00528	927	PRINTS	Disease resistance protein signature	644	660	-	-
	Vivi5g00528	927	Pfam	TIR domain	43	198	IPR000157	GO:0007165
	Vivi5g00528	927	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	43	858	IPR044974	GO:0006952
	Vivi5g00528	927	SUPERFAMILY	L domain-like	562	835	-	-
	Vivi5g00528	927	ProSiteProfiles	TIR domain profile.	41	202	IPR000157	GO:0007165
	Vivi5g00528	927	Gene3D	-	40	205	IPR035897	-
	Vivi5g00528	927	SUPERFAMILY	Toll/Interleukin receptor TIR domain	41	179	IPR035897	-
	Vivi5g00528	927	Gene3D	-	206	365	IPR027417	-
	Vivi5g00528	927	SMART	till_3	42	176	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g00528	Vivi-Chr5	8693014	8696533	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g00528	41	761	WRKY Transcription Factor Family	AT4G12020	32.436	7.88e-93	321

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g00528	-		-	cam:101494533	1186.4