Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00512 ATGGCTGCAGGAGTCTTCATGCAGGAGTCTGAAGAGTTTTTGTTGGCTTTACTCCGTGCATTGGATAATCTTCCTGTGAACCTTCACGCACTACAAACCTGTAATGTTGGAAAATCGGTTAATAATTTACGTAGCCACAAAAATTCTGAATACAAGGAAACAAACCTTCCTGTTGAATCTGATATTGTTAGATGCAACATTAGGACTCTCTCCAATTTTGGCAGCAGTAGTAATGTTAGGTTGAATTCAAAAATGGATAAGTTAGGGGTTATTCAGGTTCACAATGGGAAATTTGCTCAGAATAATTCACTGGATGTTTTGTCTAGGGGAGTTAAAGGTAATGAAGGAAGGAAGGGGGGTGGTAGCCTTATTAAAAGAAAAAAGATTAGAAGTCTGATAACAAAAAGAAGGGCTGATTTCTTTCTTATACAAGAAACGAAATTGAAAGATATTAATGAGGCGATGGTTAGAAGTTTGTGGGGGGAGGATGATATGGATTTTTCTTTTTCAGCTTCGGAAGGATTATTAGGTGGATTACTATCCATTTGGAGAACTCAAACAGTTACTGTCTTGGCTAGTTTTTCTGGACCGGGGTTCCTTGGATCAAAATTTTTGTGGAAAGGAGATTATTTCTATGTTTTTAATGTTTACTCTGCTTGTGCTTTGCCTCTAAAGCGTATTTTATGGACCCAGTTGATTGATCTGAAAAACAAATATCAAGACAGAGAACGGATAATAGCGGGAGATTTTAATGCGGTAAAAAAGAGGAGCGAGAGATGTGGCCTTTCTTCTAGGAGTTGCAATGTTGAATGGAGAGAGTTTTCGGATTTCATTGATGAAACCGGGCTTGTAGACGTGCCTTGCAAAGGCAAGAGGTTCTCTTGGTTTAGTGGGGATGGAAAATCGAAGAGCAGAATCGATAGATTTCTTATTTCCAAGAATATTATCTTGTCTTGGGGGGTGGTAGGACAATGGATAGGCATGAGAGATGTTTCCGATCATTACCCGGTGTGGTTGATGGTTGACAAAGAAGATTGGGGTCCAAAACCGTTCAAGTTCAATAATGAATGGTTTAATGACAAGAGCTTCTATGACTTTGTTAAGAAGGAGTGGGAGGGGCTTATCATAGAGGAGAATGTGAAGGAGCTAAATGAAGGGGACGATAGGGATGTTTGGGAGGAAGATATTCATCTTAATAAAGTCAAGGCCTCTAAGAACATTTGGTTCAATCTTAAACTCAAGGAGAACATGTTGATTCAAAAAAGTAGGTTGAAGTGGCTAGATGATGGGGATGTTAATAGTAGATTCTTCCATAACGCGGCGAAGGAGAGGAGGCGTAGGAACTGTATTTGCTTGATAGATTCTAATGAAGGGGTCGTTTCTTCGGTTAATGAGGTAAGGGAAATGGTGAAGACTCATTTTGAATGCAAATTTAAGGAGGATTGTTTTGAAAGACCTTTGTTGGATGGTATTGATTTTAAATCTTTGAGTGTCAACCAATCTTGTTCAATAGAGGATCCTTTTTCGATAGAGGAAATAAAGGCGGCGATTTGGAGTTGTGATGGCACTAAAAGTATGGGGCCGGATGGTATTTCGCTTCTTTTTATCAAGAAATGTTGGCCTTTTTAA 1629 0.3904 MAAGVFMQESEEFLLALLRALDNLPVNLHALQTCNVGKSVNNLRSHKNSEYKETNLPVESDIVRCNIRTLSNFGSSSNVRLNSKMDKLGVIQVHNGKFAQNNSLDVLSRGVKGNEGRKGGGSLIKRKKIRSLITKRRADFFLIQETKLKDINEAMVRSLWGEDDMDFSFSASEGLLGGLLSIWRTQTVTVLASFSGPGFLGSKFLWKGDYFYVFNVYSACALPLKRILWTQLIDLKNKYQDRERIIAGDFNAVKKRSERCGLSSRSCNVEWREFSDFIDETGLVDVPCKGKRFSWFSGDGKSKSRIDRFLISKNIILSWGVVGQWIGMRDVSDHYPVWLMVDKEDWGPKPFKFNNEWFNDKSFYDFVKKEWEGLIIEENVKELNEGDDRDVWEEDIHLNKVKASKNIWFNLKLKENMLIQKSRLKWLDDGDVNSRFFHNAAKERRRRNCICLIDSNEGVVSSVNEVREMVKTHFECKFKEDCFERPLLDGIDFKSLSVNQSCSIEDPFSIEEIKAAIWSCDGTKSMGPDGISLLFIKKCWPF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00512 542 SUPERFAMILY DNase I-like 120 341 IPR036691 -
Vivi5g00512 542 Gene3D Endonuclease/exonuclease/phosphatase 99 341 IPR036691 -
Vivi5g00512 542 ProSiteProfiles TFIIS N-terminal domain profile. 1 53 IPR017923 -
Vivi5g00512 542 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 9 51 IPR035441 -
Vivi5g00512 542 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 4 54 IPR035441 -
Vivi5g00512 542 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 11 50 - -
Vivi5g00512 542 Pfam TFIIS helical bundle-like domain 17 51 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00512 Vivi-Chr5 8492960 8500482 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vivi5g00512 Med26 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00512 - - vvo:131604131 1071.23