Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00443 ATGTCTTTTAGTTTCAACAACAACAACAACCTTTTCAATACCAATAATAATAACCTTATTAGTACAACCTTTGATATTGCAAAACTTGTTGGAACTTCTCCTCAACTCAAAACTCATGATGATGATGATGATAATTTTGAACTTGATGAAGTGATTTATAACACTTGTTCTTCTGATTTTCCACCTGGCTTTAGTCCTTCAGAGTTATTGGATTCACCTTCCTTTCTTTCTCCTGCCAATAATATTCCTTCATCTTATACAACTGAGCCATCTTGTGACCAAATCATCAACCAACAACATAACAAGGAATTAGAAGAGAGAAACTTCTCTGAGCTACCTTTTCAAACACAAAAACAAAACATGCATGAATCTTTTCAATCTTCAACAACTATGTATCAAGTGGATGAGCCAGCAAAGAAACATGACACATTAACATTCAATGAAACCAATGCTTCTAGTTCTATGTCTATCAAAGAACAAAGAAGATCAGAAGAAGATGGGTACAAGTGGAGAAAATATGGAGAGAAACAAGTGAAAGGAAGTGAAAATCCTAGAAGCTATTACAAGTGCACTAATCCAGTTTGCTTGATGAGGAAGAAAGTTGAAAGGTCTTTGGAGGGACATGTTACTGAAATAGTGTATAAGGGAAGTCATAACCATCCTAAGCCTATGTGTTCAAAGAGAAAAACAAGTTCTCAATCTATTCATCAAGGCTTTTCATCGAGCAACAATTCGTTGATTTCGGATCTTTCTTTGGGAGAGGATGAGTTTGAGCAAATGTCTCAAACTAGTTTTTCTGGAGGAGATTACGATGAGTTGGGAATCGAGGCCAAAAGATGGAAGGGAGAAAATGAGAATGATAGCTATTGTTATTCCACAGAAGGGAGTAGAACTGTTAGGGAAGCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATTCTTGATGATGGATATAGATGGAGAAAATATGGACAAAAAGTTGTTAAAGGAAATCCAAATCCAAGGAGCTACTACAAATGTGTAATCCAAGGTTGTCCTGTGAGAAAACATGTTGAGAGAGCAGCACATGATATGAAAGCAGTGATCACAACATATGAAGGGAAACATAACCATGAAGTACCTCTAGGAAGAGGAAGTTCAAGCTATCACATGAACAAAACATCTCTTAACAACAACAACATCACATGTAATGTAACCCCTATAAGGCCTTCACCAGTGACTAATTATTCTATCTTATCAAATTTCACAAATGCACTTCATGATTCAAAGCTACCAAATTCTGGAACTCAAGTACAACAACCTTTTCAGCTAGACATGATGCTGAATTCTACAAACCTTTCGGACAAATCAACCGGATCAAATGTAGATTATGAACAATACTCGGCTAAGGATAACTCGTTCCTTCAGTCTTTTTTGTCGAAGAATTTATAA 1434 0.3591 MSFSFNNNNNLFNTNNNNLISTTFDIAKLVGTSPQLKTHDDDDDNFELDEVIYNTCSSDFPPGFSPSELLDSPSFLSPANNIPSSYTTEPSCDQIINQQHNKELEERNFSELPFQTQKQNMHESFQSSTTMYQVDEPAKKHDTLTFNETNASSSMSIKEQRRSEEDGYKWRKYGEKQVKGSENPRSYYKCTNPVCLMRKKVERSLEGHVTEIVYKGSHNHPKPMCSKRKTSSQSIHQGFSSSNNSLISDLSLGEDEFEQMSQTSFSGGDYDELGIEAKRWKGENENDSYCYSTEGSRTVREARVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCPVRKHVERAAHDMKAVITTYEGKHNHEVPLGRGSSSYHMNKTSLNNNNITCNVTPIRPSPVTNYSILSNFTNALHDSKLPNSGTQVQQPFQLDMMLNSTNLSDKSTGSNVDYEQYSAKDNSFLQSFLSKNL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00443 477 FunFam WRKY transcription factor 151 224 - -
Vivi5g00443 477 SMART WRKY_cls 164 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g00443 477 SMART WRKY_cls 315 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g00443 477 MobiDBLite consensus disorder prediction 226 242 - -
Vivi5g00443 477 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 71 393 IPR044810 GO:0003700
Vivi5g00443 477 Pfam WRKY DNA -binding domain 165 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g00443 477 Pfam WRKY DNA -binding domain 316 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g00443 477 SUPERFAMILY WRKY DNA-binding domain 307 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g00443 477 SUPERFAMILY WRKY DNA-binding domain 162 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g00443 477 FunFam WRKY transcription factor 33 302 368 - -
Vivi5g00443 477 ProSiteProfiles WRKY domain profile. 310 375 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g00443 477 Gene3D WRKY domain 149 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g00443 477 Gene3D WRKY domain 300 376 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g00443 477 MobiDBLite consensus disorder prediction 217 242 - -
Vivi5g00443 477 ProSiteProfiles WRKY domain profile. 165 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00443 Vivi-Chr5 6552788 6555636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00443 64 443 WRKY Transcription Factor Family AT2G38470 45.727 1.63e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi5g00443 WRKY 1.9e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02316 6 102106456 102108661 Vivi5g00443 5 6552788 6555636 PCT