Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00412 ATGGTTAGTTACTACAAAATGAGAAACTCATTTAAGACTTTTAACAAACACTTCACTTTCATTTCTTTTCATAAACTTCGTTACTCTTATGGTTTCATAGCTTCTTCTTCTTCTCTCACACATCTCACCTTCTCTCAATTCCGCTCATCATTTTCCGCATCTCCGTCTTCTACATTTATGGAGGTATTCAAGGAAATTGCTAAGCAAGACCTTGCATCCCATGGAAATGTTGCTATCAGAGCTGATCACAAGAGCTATAGTTACAAGCAGCTAATCTCGTCGGCACTCGAGATTTCTAATCTCTTATGTGGAAGTGATGTCAAAGGAAATGTTGCTGGAGCTCGAATAGGAATTGTAGCCAAACCCTCTGCTGAATTTGTTGCTGGAATACTTGGGACTTGGCTTAGTGGAGGTGTTGCTGTTCCGCTTGCGGTCAACTATCCCGAAGTGGAGCTTCTGTATGTGATGAATAATTCGGACACATCTGCAATACTGAGTACTGAAGATCATAGTGAACTAATGCAAAACATTGCCAATAAAACCTCTTCAAATTTTTTTCATCTTCCACCTGTTGCTAATAATTCGTTAGATAAGAACACAGACGAACATTCACAAAATGGAGAAGTTGATGCAGCCAGAATTTTCCTGGAGAATATTGAAAGATCAAGTGAAGACCCGGCACTCATTTTGTACACTAGCGGAACAACAGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTGCTCAGGTCCAATCATTGACAAAAGCGTGGGAGTACACTTCTACTGATCAGTTTTTGCATTGTCTCCCGCTGCATCATGTCCACGGGCTTTTCAACGGTTTACTGGCCCCTCTCTACGCTGGTTCCACGGTTGAGTTTTTGCCAAAATTTAGTGTCAGGGGAGTTTGGCAGAGATGGCGCGAATCATATCCAAATGAAGGGTCTAAGGCTGATGATGCTATAACAGTATTCACTGGAGTTCCAACTATATATGCTCGATTAATTCAAGGGTATCATGCGATGGATCCGGAGCTACAAGCTGCTTCAGCATCGGCTGCAAAGAACTTGCGTCTAATGATGTGTGGATCCTCGGCACTTCCGCAACCTGTTATGCTAGAATGGGAAGCCATCACTGGGCATCGCTTATTGGAGCGATACGGCATGACTGAATTTGTCATGGCATTGTCAAATCCATTGAAAGGTGAGCGTAAAGCAGGCACAGTTGGAAAACCACTGCCCGGCGTACAGGTCAAGATTCTTTCAGATGGAGAGAATTGGAGTGAAAAAACAGGAGCCAGCGGCGAGCTTTGCGTTAAAAGTCCTTCACTGTTTAAAGAATATTGGAAACTTCCAGAGGTAACGAAGGAATCATTTACGGAAGAAGGATTCTATAAGACTGGAGATGCCGTTACAACAGATAAAGATGGATATTACATCATTCTAGGACGTACTAATGCGGATATCATCAAGGCCGGGGGCTATAAGCTGTCTGCGTTAGAAATCGAATCAGTTATAATAGAGCATCCAAGTGTCTCAGAATGTTGTGTCTTGGGATTACCACACAAAGAGTATGGAGAAATTGTCGGTGCAATTATCGTGCCAGAGGCCGATATTAAACGAAAGCAAGATGAAGAATCAAAGCCTGCTCTTAGCCTAGAAGAATTATCCACCTGGGCCAAAGATAAACTTGCACCTTACAAGATACCAACTCGACTAATCGTGTGGGACTCACTCCCCCGCAATGCAATGGGGAAGGTAAGTAAAAAAGAGCTGAAGAAGATTCTAGCTTCAGAACAGTAA 1809 0.4268 MVSYYKMRNSFKTFNKHFTFISFHKLRYSYGFIASSSSLTHLTFSQFRSSFSASPSSTFMEVFKEIAKQDLASHGNVAIRADHKSYSYKQLISSALEISNLLCGSDVKGNVAGARIGIVAKPSAEFVAGILGTWLSGGVAVPLAVNYPEVELLYVMNNSDTSAILSTEDHSELMQNIANKTSSNFFHLPPVANNSLDKNTDEHSQNGEVDAARIFLENIERSSEDPALILYTSGTTGKPKGVVHTHRSIIAQVQSLTKAWEYTSTDQFLHCLPLHHVHGLFNGLLAPLYAGSTVEFLPKFSVRGVWQRWRESYPNEGSKADDAITVFTGVPTIYARLIQGYHAMDPELQAASASAAKNLRLMMCGSSALPQPVMLEWEAITGHRLLERYGMTEFVMALSNPLKGERKAGTVGKPLPGVQVKILSDGENWSEKTGASGELCVKSPSLFKEYWKLPEVTKESFTEEGFYKTGDAVTTDKDGYYIILGRTNADIIKAGGYKLSALEIESVIIEHPSVSECCVLGLPHKEYGEIVGAIIVPEADIKRKQDEESKPALSLEELSTWAKDKLAPYKIPTRLIVWDSLPRNAMGKVSKKELKKILASEQ 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00412 602 Gene3D - 489 602 IPR045851 -
Vivi5g00412 602 Pfam AMP-binding enzyme 74 492 IPR000873 -
Vivi5g00412 602 CDD MCS 77 596 - -
Vivi5g00412 602 Gene3D - 63 486 IPR042099 -
Vivi5g00412 602 FunFam Acyl-CoA synthetase family member 3 68 486 - -
Vivi5g00412 602 SUPERFAMILY Acetyl-CoA synthetase-like 48 600 - -
Vivi5g00412 602 PANTHER ACYL-COA SYNTHETASE 64 598 - -
Vivi5g00412 602 Pfam AMP-binding enzyme C-terminal domain 503 588 IPR025110 -
Vivi5g00412 602 ProSitePatterns Putative AMP-binding domain signature. 229 240 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00412 Vivi-Chr5 6025327 6034049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00412 224 600 Monolignol Biosynthesis Gene Families AT4G19010 29.082 3.24e-44 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00412 K18660 - gmx:100813324 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00412 5 6025327 6034049 Vivi5g00412 5 6025327 6034049 ECH