Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00380 ATGGATTTCTGGCCAGAGTTTCTTGCAAGTAGTTCAGGTAGAGAGTTTGTGGCAGGTGGATTTGGAGGCATTGCTGGTGTGATTTCTGGTTATCCTTTGGATACTATTAGAATCAGACAACAGAGTTCAAAGAATAATGGTTCTGCTTTTGGAATCCTTAGGAAAATGGTGGCTAAAGAAGGAGCAGCTTCTTTGTACCGTGGCATGGCTGCACCATTAGCATCAGTGACTTTTCAGAATGCAATAGTTTTTCAAACATATGCTCTTCTATCAAGAGCATTTGATCCATCTGATTCTGCTAAACACCCTCCATCCTACAAAAGTGTCGCATTAGGCGGAATCGGGACAGGAGGACTTCAAAGTTTATTGTTATCACCAGTAGAACTCATCAAAATCCGACTTCAGCTGCAAAACACAAACCAGTCAAAAGAATCAACAACATCAACAAGTCCTATAAAAGTAGCAAAAAACATATGGAGAAAAGAGGGTCTCCGCGGCATATATCGAGGACTCGGCATAACCATAATGAGAGATGTACCTTCTCATGGAGTTTACTTCTGGACATATGAATACATGAGGGAGCATTTCCATCCAGGTTGTCGAACAAGCGGTAAAGAAAGTCTGAATACTATGTTGGTGTCCGGAGGATTAGCGGGCGTGGCGAGCTGGGTTTGCTGCTATCCTTTTGATGTTGTGAAAACAAGACTGCAGGGTCAGACACCATCTGCTATAAAATACAAAGGAATTTACGATTGCATCGCGAAAAGCGTTAAAGAAGAAGGTTATCTTGTGTTGTGGAGAGGTTTAGGAACTGCAGTTGGCAGAGCTTTTGTGGTGAATGGTGCTGTATTTGCTGCTTATGAGTTTTCATTAAGGTTTCTGTTTAATAATGATAACATTCAAATGCAGGAAACACTTTAG 921 0.4137 MDFWPEFLASSSGREFVAGGFGGIAGVISGYPLDTIRIRQQSSKNNGSAFGILRKMVAKEGAASLYRGMAAPLASVTFQNAIVFQTYALLSRAFDPSDSAKHPPSYKSVALGGIGTGGLQSLLLSPVELIKIRLQLQNTNQSKESTTSTSPIKVAKNIWRKEGLRGIYRGLGITIMRDVPSHGVYFWTYEYMREHFHPGCRTSGKESLNTMLVSGGLAGVASWVCCYPFDVVKTRLQGQTPSAIKYKGIYDCIAKSVKEEGYLVLWRGLGTAVGRAFVVNGAVFAAYEFSLRFLFNNDNIQMQETL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00380 306 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Vivi5g00380 306 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Vivi5g00380 306 PRINTS Mitochondrial carrier protein signature 168 186 IPR002067 GO:0055085
Vivi5g00380 306 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Vivi5g00380 306 PRINTS Mitochondrial carrier protein signature 215 237 IPR002067 GO:0055085
Vivi5g00380 306 FunFam Mitochondrial arginine transporter BAC2 11 304 - -
Vivi5g00380 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 195 IPR018108 -
Vivi5g00380 306 Gene3D Mitochondrial carrier domain 12 305 IPR023395 -
Vivi5g00380 306 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 294 - -
Vivi5g00380 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 206 293 IPR018108 -
Vivi5g00380 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 93 IPR018108 -
Vivi5g00380 306 Pfam Mitochondrial carrier protein 210 297 IPR018108 -
Vivi5g00380 306 Pfam Mitochondrial carrier protein 12 94 IPR018108 -
Vivi5g00380 306 Pfam Mitochondrial carrier protein 105 197 IPR018108 -
Vivi5g00380 306 SUPERFAMILY Mitochondrial carrier 14 289 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00380 Vivi-Chr5 5385955 5388328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00380 1 298 Antiporters AT1G79900 69.799 2.37e-142 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00380 K15109 - gmx:100812056 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00380 5 5385955 5388328 Vivi5g00380 5 5385955 5388328 ECH