Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00358 ATGCGTCCACCAATGAGAAGAGTTAATTACAAAGTTAGAGATAAAGTGGAAGTATGCAGTAAAGAAGAAGGATTTGTTGGTTCCTACTTTAAAGCCACGATTGTTTCTTGCCTTGAAAATGAGGAATATGTGGTTCGTTACAAAAATTTATTGTCGGACGATGAGTCTAAACCTCTCACAGAAACAATTCATCGGAGAGAGCTTCGTCCATTGCCGCCACGTGTTCGCAATCCATCTGAGTTTCATTTCAATCAAAAAGTGGATGTTTTTGATAATGATGGTTGGTGGTTAGGAGAAATTACTAGCGAGAAGACCCTCTTCGAAAATTGTTATTATTATAAGGTGTATTTCAATACTACCGATGAGACGATTTACTATCCTCTTGATCAGATAAGGGTTCATCACGAATGGATTTATGGAGAATGGATCATAGAAACATAA 441 0.3719 MRPPMRRVNYKVRDKVEVCSKEEGFVGSYFKATIVSCLENEEYVVRYKNLLSDDESKPLTETIHRRELRPLPPRVRNPSEFHFNQKVDVFDNDGWWLGEITSEKTLFENCYYYKVYFNTTDETIYYPLDQIRVHHEWIYGEWIIET 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00358 146 CDD Tudor_Agenet_AtDUF_rpt1_3 14 73 - -
Vivi5g00358 146 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 143 - -
Vivi5g00358 146 Gene3D - 2 76 - -
Vivi5g00358 146 SMART agenet_At_2 8 76 IPR014002 -
Vivi5g00358 146 SMART agenet_At_2 79 139 IPR014002 -
Vivi5g00358 146 Pfam Agenet domain 14 73 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00358 Vivi-Chr5 4817238 4817678 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00358 20 137 PHD Transcription Factor Family AT5G58610 28.467 7.76e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00358 - - psat:127104950 209.92