Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00356 ATGCGTCCTCCAATGAAAAGAGTCAACTACAACATTGGAGACAAAGTAGAAGTATGCAGTAGAGAACAAGGATTCGTTGGTTCTTACTATAAAGCCACAATTGTTTCGTGTCTTCAAAATGAAAAATTTATGATTCGTTATGAGAATTTGTTGTCAGATGATGAGTCTGGACCTCTCAATGAAACAATCCATCGAAGAGAGCTCCGCCCATTACCGCCGCGTGTTCGCAATCCACCTGAATTCCATTTAAAACAAAAAGTTGATGTTTTTGATAACGATGGTTGGTGGTTAGGAGAAATTACTAGTGAGAAGACTCTCTACGAAGATTATTATTATTACAAAGTGTATTTTAACACTACTGATCAGATGATTTACTATCCTTGCGATCAGATTAGAGGCCATCATGAATGGATTTATGGAGAGTGGATCTTAGAAAAATAA 441 0.3673 MRPPMKRVNYNIGDKVEVCSREQGFVGSYYKATIVSCLQNEKFMIRYENLLSDDESGPLNETIHRRELRPLPPRVRNPPEFHLKQKVDVFDNDGWWLGEITSEKTLYEDYYYYKVYFNTTDQMIYYPCDQIRGHHEWIYGEWILEK 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00356 146 Gene3D - 1 74 - -
Vivi5g00356 146 CDD Tudor_Agenet_AtDUF_rpt1_3 12 73 - -
Vivi5g00356 146 Pfam Agenet domain 13 73 IPR008395 -
Vivi5g00356 146 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 143 - -
Vivi5g00356 146 SMART agenet_At_2 79 139 IPR014002 -
Vivi5g00356 146 SMART agenet_At_2 8 76 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00356 Vivi-Chr5 4781790 4782230 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00356 20 98 PHD Transcription Factor Family AT5G58610 36.364 3.52e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00356 - - psat:127104950 191.43