Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00341 ATGTCTCATTCGGAAGGGGTGCTGCTGCAGCAGCTATTCGATTATGCAAATCAGACTCCAAAATCAATGGCCTCAGGTGGTATCAATGATGCATTAGGGTTTCTTAATGCAGTAAGAGCTTCACTTCAGCCTATCGAGAGGGAAAAGTATCAACAATTTATAAAAATCCTAAGAGATTTCAGTGCTGAAAGAATTAATATAAGTGATACCATAGCAGATTTGAAGACCTTGTTTATAGGATATACACGTTTAATTTTGGAATTCAACTCTTTTCTGCCGAAGAAACATCATATCACAGTCTCATCGGAGGATGTACGGGCATTAGGTTTTCTTCAGGAAGTAGAACTTGCGTTTCAATATGATGGAGACAATAATTTTCGTCATTTTCTATATCTTTTGGAAGATTACCAGAATCAAACTATTGATCTAAGCTGTTTCACTTCTCAAGGGAAGGTGCTGCTTAAAAATTATCCCCATTTAATTTTGAAATTCAACACCTTCAGGCCATCTCAATATCGGACGGGAAAAAAAAAATTAAAAGATAATGGCCAGGCTGCTCAACTTCCTTGGGATGTGCTTGCTACAATTTGTAAAACACTAGATTTTGACGAGCTCTTTTGGTTTTCGGGTGTTTGCAAGAATTGGAGGACTTTTCACAAATCAAATTTTGTGTCATCCCGAGAACCATTGCTTGTTCATATGACTGGTAATTGTCCTCACTCATATTCCTTTATTAGCATACCCAATCAAAAAGTTTATGATTTGAACATGATGAGTAGCTTCCAGCCCCCAAACTGTGTCTATGTTAGAGTTTCCAGCGGATATTTCATCTTGGCCCATAAAAATAATTCATTTCTGCTATTCAATCCATTTACAATGAAAGAAATGGTAATCAATGCCACCTTTACAGTTGAATATATGTTATCTAATCGGCACGAAGCCTTGCTTGCTTTTGAGAAATGCTCCGAGGAATATGTCTTGGTGGTTTTATGCAAAAAGTCTAGCCGTTTGCATGTCTATAAATCTCGACACAATGGTTGGTGTACTTATTCAACATTAAAACGAAAAGAGGTGGTGGTCGACTTTGTGGTTTTGAATAATATGATATATGTTGTCACTAACAAAGCCAGGATAGGGGTACTAAACTTGAATTCCCGAAATATTCAATTTTTAAATCTCAAGAATACTCCCAATAATGATTCCTCAACTTCCATTAATTTGGTTAATTGTGATGAGCAACTTTTAGTGTTTCATTCAATATCCAGCAATTATAGAAGGGAAGTTTACAAGATAGATTTGTCAACCATGAATTATGTTAAGATGAAAACTTTGGGTGATATTGCATTATTTTATGTTTCTTGGGGAAACTGTCGGGCATTGAGCAACCCCAACAGTTCTGGTTATGAGAGCAACCATGTGTATGAAGTTAGTAGTATGTCTCAATGTATTAAGTATGATTGGAATGATGGTCGTCCATCAAAAATATACCCATATCTTCGTTCTCTTAAAGACTACAATCTCTTTGATTGGTGTTTTAGACATGTAAAGTATGAAGTTGATTATTCTTTAGTTGAATAA 1578 0.3574 MSHSEGVLLQQLFDYANQTPKSMASGGINDALGFLNAVRASLQPIEREKYQQFIKILRDFSAERINISDTIADLKTLFIGYTRLILEFNSFLPKKHHITVSSEDVRALGFLQEVELAFQYDGDNNFRHFLYLLEDYQNQTIDLSCFTSQGKVLLKNYPHLILKFNTFRPSQYRTGKKKLKDNGQAAQLPWDVLATICKTLDFDELFWFSGVCKNWRTFHKSNFVSSREPLLVHMTGNCPHSYSFISIPNQKVYDLNMMSSFQPPNCVYVRVSSGYFILAHKNNSFLLFNPFTMKEMVINATFTVEYMLSNRHEALLAFEKCSEEYVLVVLCKKSSRLHVYKSRHNGWCTYSTLKRKEVVVDFVVLNNMIYVVTNKARIGVLNLNSRNIQFLNLKNTPNNDSSTSINLVNCDEQLLVFHSISSNYRREVYKIDLSTMNYVKMKTLGDIALFYVSWGNCRALSNPNSSGYESNHVYEVSSMSQCIKYDWNDGRPSKIYPYLRSLKDYNLFDWCFRHVKYEVDYSLVE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00341 525 SUPERFAMILY F-box domain 185 224 IPR036047 GO:0005515
Vivi5g00341 525 ProSiteProfiles PAH domain profile. 98 171 IPR003822 GO:0006355
Vivi5g00341 525 ProSiteProfiles PAH domain profile. 19 95 IPR003822 GO:0006355
Vivi5g00341 525 Gene3D Paired amphipathic helix 30 93 IPR036600 GO:0006355
Vivi5g00341 525 Gene3D Paired amphipathic helix 106 169 IPR036600 GO:0006355
Vivi5g00341 525 Pfam F-box domain 187 217 IPR001810 GO:0005515
Vivi5g00341 525 SUPERFAMILY PAH2 domain 27 94 IPR036600 GO:0006355
Vivi5g00341 525 SUPERFAMILY Tricorn protease domain 2 263 497 - -
Vivi5g00341 525 SUPERFAMILY PAH2 domain 106 169 IPR036600 GO:0006355
Vivi5g00341 525 Pfam Paired amphipathic helix repeat 126 167 IPR003822 GO:0006355
Vivi5g00341 525 Pfam Paired amphipathic helix repeat 48 92 IPR003822 GO:0006355
Vivi5g00341 525 CDD F-box_SF 186 216 - -
Vivi5g00341 525 PANTHER OS09G0392200 PROTEIN 175 477 IPR044619 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00341 Vivi-Chr5 4561960 4563951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00341 26 119 WRKY Transcription Factor Family AT4G12020 37.500 1.16e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi5g00341 PAH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00341 - - vvo:131635782 686.411