Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00340 ATGTCTCATTCGGAAGGGGTGCTGCTGCAGCAGCTATTCGATTATGCAAATCAGACTCCAAAATCAATGGCCTCAGGTGGTATCAATGATGCATTAGGGTTTCTTAATGCAGTAAGAGCTTCACTTCAGCCTATCGAGAGGGAAAAGTATCAACAATTTATAAAAATCCTAAGAGATTTCAGTGCTGAAAGAATTAATATAAGTGATACCATAGCAGATTTGAAGACCTTGTTTATAGGATATACACGTTTAATTTTGGAATTCAACTCTTTTCTGCCGAAGAAACATCATATCACAGTCTCATCGGAGGATGTACGGGCATTAGGTTTTCTTCAGGAAGTAGAACTTGCGTTTCAATATGATGGAGACAATAATTTTCGTCATTTTCTATATCTTTTGGAAGATTACCAGAATCAAACTATTGATCTAAGCTGTTTCACTTCTCAAGGGAAGGTGCTGCTTAAAAATTATCCCCATTTAATTTTGAAATTCAACACCTTCAGGCCATCTCAATATCGGACGGGAAAAAAAAAATTAAAAGATAATGGCCAGGCTGCTCAACTTCCTTGGGATGTGCTTGCTACAATTTGTAAAACACTAGATTTTGACGAGCTCTTTTGGTTTTCGGGTGTTTGCAAGAATTGGAGGACTTTTCACAAATCAAATTTTGTGTCATCCCGAGAACCATTGCTTGTTCATATGACTGTTGAATATATGTTATCTAATCGGCACGAAGCCTTGCTTGCTTTTGAGAAATGCTCCGAGGAATATGTCTTGGTGGTTTTATGCAAAAAGTCTAGCCGTTTGCATGTCTATAAATCTCGACACAATGGTTGGTGTACTTATTCAACATTAAAACGAAAAGAGGTGGTGGTCGACTTTGTGGTTTTGAATAATATGATATATGTTGTCACTAACAAAGCCAGGATAGGGGTACTAAACTTGAATTCCCGAAATATTCAATTTTTAAATCTCAAGAATACTCCCAATAATGATTCCTCAACTTCCATTAATTTGGTTAATTGTGATGAGCAACTTTTAGTGTTTCATTCAATATCCAGCAATTATAGAAGGGAAGTTTACAAGATAGATTTGTCAACCATGAATTATGTTAAGATGAAAACTTTGGGTGATATTGCATTATTTTATGTTTCTTGGGGAAACTGTCGGGCATTGAGCAACCCCAACAGTTCTGGTTATGAGAGCAACCATGTGTATGAAGTTAGTAGTATGTCTCAATGTATTAAGTATGATTGGAATGATGGTCGTCCATCAAAAATATACCCATATCTTCGTTCTCTTAAAGACTACAATCTCTTTGATTGGTGTTTTAGACATGTAAAGTATGAAGTTGATTATTCTTTAGTTGAATAA 1374 0.3581 MSHSEGVLLQQLFDYANQTPKSMASGGINDALGFLNAVRASLQPIEREKYQQFIKILRDFSAERINISDTIADLKTLFIGYTRLILEFNSFLPKKHHITVSSEDVRALGFLQEVELAFQYDGDNNFRHFLYLLEDYQNQTIDLSCFTSQGKVLLKNYPHLILKFNTFRPSQYRTGKKKLKDNGQAAQLPWDVLATICKTLDFDELFWFSGVCKNWRTFHKSNFVSSREPLLVHMTVEYMLSNRHEALLAFEKCSEEYVLVVLCKKSSRLHVYKSRHNGWCTYSTLKRKEVVVDFVVLNNMIYVVTNKARIGVLNLNSRNIQFLNLKNTPNNDSSTSINLVNCDEQLLVFHSISSNYRREVYKIDLSTMNYVKMKTLGDIALFYVSWGNCRALSNPNSSGYESNHVYEVSSMSQCIKYDWNDGRPSKIYPYLRSLKDYNLFDWCFRHVKYEVDYSLVE 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00340 457 ProSiteProfiles PAH domain profile. 98 171 IPR003822 GO:0006355
Vivi5g00340 457 ProSiteProfiles PAH domain profile. 19 95 IPR003822 GO:0006355
Vivi5g00340 457 SUPERFAMILY PAH2 domain 106 169 IPR036600 GO:0006355
Vivi5g00340 457 SUPERFAMILY PAH2 domain 27 94 IPR036600 GO:0006355
Vivi5g00340 457 Pfam F-box domain 187 217 IPR001810 GO:0005515
Vivi5g00340 457 Gene3D Paired amphipathic helix 30 93 IPR036600 GO:0006355
Vivi5g00340 457 Gene3D Paired amphipathic helix 106 169 IPR036600 GO:0006355
Vivi5g00340 457 PANTHER OS09G0392200 PROTEIN 244 410 IPR044619 -
Vivi5g00340 457 Pfam Paired amphipathic helix repeat 48 92 IPR003822 GO:0006355
Vivi5g00340 457 Pfam Paired amphipathic helix repeat 126 167 IPR003822 GO:0006355
Vivi5g00340 457 SUPERFAMILY F-box domain 185 225 IPR036047 GO:0005515
Vivi5g00340 457 CDD F-box_SF 186 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00340 Vivi-Chr5 4561960 4563952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00340 26 119 WRKY Transcription Factor Family AT4G12020 37.500 9.64e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi5g00340 PAH 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00340 - - vvo:131635782 369.007