Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00337 ATGGCAAGAGAAGGTTTAGGACTTGAAATAACCGAGCTAAGGTTAGGTTTATCATGCGGTGATCAACCAAAGAATGAGAAGAAGAGGAAGTTCTCGGAGATCGAGTGTGGCGGGGAAGGAGATGGAGGCTCCGGTGACCGGAAAAGTGTTGATAAGAAGAATCAAGTTGTCGGGTGGCCTCCGGTGTGCTCGTACCGGAAGAAGAACATGAATGAAGGTTCAAAAATGTATATGAAGGTTAGTATGGATGGAGCTCCTTACTTGCGTAAGATTGATCTTGGTTTGCATAAGGGATACTTGGAGTTGGCTTTGGCTTTGGAGAAGCTCTTTGATTGTTGTGGAATTGAAGAGGCATTGAAGGATGCAGAAAATTGTGAACACGTTCCAATTTATGAAGACAAAGATGGTGATTGGATGCTGGTCGGAGATGTCCCGTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGGTCAGATGCAAAGGGCTTTGGTTTGCAACCAAAAGGGTCTTTGAAGAGATTCATATAG 540 0.4426 MAREGLGLEITELRLGLSCGDQPKNEKKRKFSEIECGGEGDGGSGDRKSVDKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLGLHKGYLELALALEKLFDCCGIEEALKDAENCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKRFI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00337 179 ProSiteProfiles PB1 domain profile. 75 163 IPR000270 GO:0005515
Vivi5g00337 179 MobiDBLite consensus disorder prediction 21 52 - -
Vivi5g00337 179 Pfam AUX/IAA family 47 167 IPR033389 -
Vivi5g00337 179 Gene3D - 69 172 - -
Vivi5g00337 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 165 IPR003311 GO:0005634|GO:0006355
Vivi5g00337 179 MobiDBLite consensus disorder prediction 18 52 - -
Vivi5g00337 179 FunFam Auxin-responsive protein 70 171 - -
Vivi5g00337 179 SUPERFAMILY CAD & PB1 domains 68 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00337 Vivi-Chr5 4495430 4501878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00337 67 165 B3 DNA Binding Superfamily AT4G23980 37.374 1.35e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vivi5g00337 AUX_IAA 1.9e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00337 K14484 - gmx:100791342 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00337 5 4495430 4501878 Vivi2g07846 2 227095734 227096590 PCT