Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00336 ATGGCAAGAGAAGGTTTAGGACTTGAAATAACCGAGCTAAGGTTAGGTTTATCATGCGGTGATCAACCAAAGAATGAGAAGAAGAGGAAGTTCTCGGAGATCGAGTGTGGCGGGGAAGGAGATGGAGGCTCCGGTGACCGGAAAAGTGTTGATAAGAAGAATCAAGTTGTCGGGTGGCCTCCGGTGTGCTCGTACCGGAAGAAGAACATGAATGAAGGTTCAAAAATGTATATGAAGGTTAGTATGGATGGAGCTCCTTACTTGCGTAAGATTGATCTTGGTTTGCATAAGGGATACTTGGAGTTGGCTTTGGCTTTGGAGAAGCTCTTTGATTGTTGTGGAATTGAGGCATTGAAGGATGCAGAAAATTGTGAACACGTTCCAATTTATGAAGACAAAGATGGTGATTGGATGCTGGTCGGAGATGTCCCGTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGGTCAGATGCAAAGGGCTTTGGTTTGCAACCAAAAGGGTCTTTGAAGAGATTCATATAG 537 0.4432 MAREGLGLEITELRLGLSCGDQPKNEKKRKFSEIECGGEGDGGSGDRKSVDKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLGLHKGYLELALALEKLFDCCGIEALKDAENCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKRFI 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00336 178 MobiDBLite consensus disorder prediction 21 52 - -
Vivi5g00336 178 SUPERFAMILY CAD & PB1 domains 68 159 - -
Vivi5g00336 178 FunFam Auxin-responsive protein 70 170 - -
Vivi5g00336 178 MobiDBLite consensus disorder prediction 18 52 - -
Vivi5g00336 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 164 IPR003311 GO:0005634|GO:0006355
Vivi5g00336 178 ProSiteProfiles PB1 domain profile. 75 162 IPR000270 GO:0005515
Vivi5g00336 178 Pfam AUX/IAA family 49 166 IPR033389 -
Vivi5g00336 178 Gene3D - 69 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00336 Vivi-Chr5 4495430 4501879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00336 67 164 B3 DNA Binding Superfamily AT4G23980 37.755 1.48e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi5g00336 AUX_IAA 9e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00336 K14484 - gmx:100791342 272.322