Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00334 ATGGCCGGTGGTGTTGGTGGTGGCGGTGGCGGTGGCGGTGGTGGTGGTAGTTCATTGACAGGTTTGCAAGAACATGTGAAGTTAGCAAGAGATTATGCTCTTGAAGGTTTATATGATACTTCTATCATCTTCTTCGATGGTGCTGTTGCACAAATCAACAGGCATCTAAACAGTGTTGACGACCCTTTAATTCGTGCAAAATGGATGAATGTTAAGAAAGCTCTTTCTGAGGAAACTGAAGTTGTAAAGCAACTTGATGCAGATAAAAGGGCGTTTAAAGATAATCCTATTGGAAGACGTCCTCCGTCGCCTCCGATTTCTACTAAATCTTCGTTTGTTTTTCAGCCGTTAGATGAGTATCCTACTTCATCGAATTCTTCCTTTGATGATCCTGATGTATGGAGGCCACCTAGTAGGGATACTGGAAGTAGAAGGCCTGGAAGGGGTGGTCAAGTGAGTAATCGGAAATCTCAACAAGATAGTAAATGGGCTCGAGGTGCTACAACAAAGACAGCTACCACTGGCCGTGGTGGTGCAAAGGCTGGTGGTGCTACTAGCAAGGTTAACTCAGGGGGCCGGACATCAACTCCCGTAAAGAAAGGTGGTGCGTCGGGAAAGTCTAGCAAGACAGATGCAGTTAATGGTGATGCTGAAGAAGGGAAGTCGAATAAAGGACAATACGAAGGTCCTGACCCTGAATTGGCTGAAATGCTAGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGATGATGTTGCTGGTCTTACTGAAGCAAAAAGGCTTTTAGAAGAAGCCGTTGTGCTTCCCTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCTTGGAAGGGTGTCCTTATGTTTGGTCCTCCGGGAACTGGAAAGACTCTTCTTGCTAAGGCAGTTGCTACTGAATGCGGGACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGAGGAGAAAGTGAGCGAATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCTTATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGAGAGCATGAATCATCCCGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAACAGTGGTACAAATGAAGATGGTAGCAAGAAAATAGTAATGGTCTTGGCAGCTACTAACTTTCCATGGGACATAGATGAAGCACTAAGGAGAAGGCTGGAAAAGAGAATATATATTCCTCTTCCGAATTTCGAGAGTCGTAAAGAGTTGATCCGGATAAATCTGAAGACCGTTGAGGTGGCCCAGGATGTCAACATAGATGACGTGGCTCGTCGAACTGATGGCTATAGTGGGGATGATTTAACAAACGTCTGTCGTGATGCTTCCTTAAATGGAATGAGACGGAAGATAGCAGGAAAGACACGCGATGAAATTAAGAGTATGTCTAAGGATGATATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGCAAAGGTTCAGCGAAGTGTTTCTCCGGCAGATATCGAACGCCATGAGAAGTGGTTTCATGAATTTGGATCTGCATAA 1611 0.4451 MAGGVGGGGGGGGGGGSSLTGLQEHVKLARDYALEGLYDTSIIFFDGAVAQINRHLNSVDDPLIRAKWMNVKKALSEETEVVKQLDADKRAFKDNPIGRRPPSPPISTKSSFVFQPLDEYPTSSNSSFDDPDVWRPPSRDTGSRRPGRGGQVSNRKSQQDSKWARGATTKTATTGRGGAKAGGATSKVNSGGRTSTPVKKGGASGKSSKTDAVNGDAEEGKSNKGQYEGPDPELAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSGTNEDGSKKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAQDVNIDDVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKSMSKDDISKDPVAMCDFEEALAKVQRSVSPADIERHEKWFHEFGSA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00334 536 CDD Kp60-NTD 22 87 - -
Vivi5g00334 536 FunFam Katanin p60 ATPase-containing subunit A1 246 414 - -
Vivi5g00334 536 MobiDBLite consensus disorder prediction 187 211 - -
Vivi5g00334 536 MobiDBLite consensus disorder prediction 116 131 - -
Vivi5g00334 536 Pfam AAA+ lid domain 447 488 IPR041569 -
Vivi5g00334 536 FunFam Katanin p60 ATPase-containing subunit A1 426 512 - -
Vivi5g00334 536 Pfam ATPase family associated with various cellular activities (AAA) 288 425 IPR003959 GO:0005524|GO:0016887
Vivi5g00334 536 ProSitePatterns AAA-protein family signature. 397 416 IPR003960 GO:0005524|GO:0016887
Vivi5g00334 536 SMART AAA_5 284 427 IPR003593 GO:0016887
Vivi5g00334 536 MobiDBLite consensus disorder prediction 116 231 - -
Vivi5g00334 536 MobiDBLite consensus disorder prediction 147 175 - -
Vivi5g00334 536 MobiDBLite consensus disorder prediction 212 226 - -
Vivi5g00334 536 Gene3D - 246 526 IPR027417 -
Vivi5g00334 536 FunFam Katanin p60 ATPase-containing subunit A1 17 93 - -
Vivi5g00334 536 Pfam Vps4 C terminal oligomerisation domain 489 534 IPR015415 -
Vivi5g00334 536 PANTHER AAA DOMAIN-CONTAINING 38 535 - -
Vivi5g00334 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 521 IPR027417 -
Vivi5g00334 536 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 20 536 IPR028596 GO:0008017|GO:0008568|GO:0051013
Vivi5g00334 536 Gene3D - 426 512 - -
Vivi5g00334 536 Gene3D - 17 93 - -
Vivi5g00334 536 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00334 Vivi-Chr5 4471285 4474619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00334 240 528 Calmodulin-binding Proteins AT3G56690 39.262 1.98e-49 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00334 K07767 - zju:112489859 884.789